PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03454A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 421aa    MW: 45868.5 Da    PI: 6.9033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03454AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.87.8e-48312792233
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl. 83 
                                ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ +++A+ ar  r   ++ ++  +  +++  ++++++++++l 
  Oropetium_20150105_03454A  31 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSWLLRAMVARACRlCAPHPAAGARQLPAP--REERTMSVTELa 112
                                699***************************************************3334444333333333..344444555556 PP

                       GRAS  84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetg 162
                                 + +++P+++f++ + N aIl+av+ + +vH++D+++++++QWp+L++ L++R+ ++pp lRiT+ ++  ++        ee+g
  Oropetium_20150105_03454A 113 dYIDLTPWHRFGFTASNGAILRAVADSAAVHVVDLSVTHCMQWPTLIDVLSKRDgGPPPALRITVPSARPAVpplLGVPDEELG 196
                                7*****************************************************55667*****99996666877777789*** PP

                       GRAS 163 erLakfAeelgvpfefnvl................vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                 rL +fA++ gv++efnv+                  ++   l     ++ +L ++ gEal+Vn++  l ++       +  rd
  Oropetium_20150105_03454A 197 LRLVNFAKSKGVQLEFNVVnsnktpspssaespkkKPDE---LasvltDPTSLGLRDGEALVVNCHGWLRHVA------PGSRD 271
                                *******************88888888777664432233...24446789999**************999997......44577 PP

                       GRAS 226 evLklvks 233
                                ++L +v+ 
  Oropetium_20150105_03454A 272 AFLAAVRA 279
                                89999985 PP
2GRAS44.52.5e-14332418287374
                       GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                                ++ +gr+i++vv +  ++ +er e+  +  er+++ GF  v+l+e++a+++k+ll++++  g+ v+ e++ +vl+Wk++  v +
  Oropetium_20150105_03454A 332 EAAVGRKIESVVGTDADSAVERAESGVRLVERMRRNGFAGVQLEEEVADEVKRLLNEHA-TGWGVKREDDMMVLTWKGHGAVYT 414
                                5569*******************************************************.99********************** PP

                       GRAS 371 SaWr 374
                                S W+
  Oropetium_20150105_03454A 415 STWT 418
                                ***5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.9354399IPR005202Transcription factor GRAS
PfamPF035142.7E-4531279IPR005202Transcription factor GRAS
PfamPF035148.8E-12332418IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEQELRSGGG ISRAHSSVCF SGALIDGPRI QQLLLHCAAA LESNDVTLAQ QAMWVLNNIA  60
SAQGDPNQRL TSWLLRAMVA RACRLCAPHP AAGARQLPAP REERTMSVTE LADYIDLTPW  120
HRFGFTASNG AILRAVADSA AVHVVDLSVT HCMQWPTLID VLSKRDGGPP PALRITVPSA  180
RPAVPPLLGV PDEELGLRLV NFAKSKGVQL EFNVVNSNKT PSPSSAESPK KKPDELASVL  240
TDPTSLGLRD GEALVVNCHG WLRHVAPGSR DAFLAAVRAX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX HEAAVGRKIE SVVGTDADSA VERAESGVRL  360
VERMRRNGFA GVQLEEEVAD EVKRLLNEHA TGWGVKREDD MMVLTWKGHG AVYTSTWTPN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-253327890323Protein SHORT-ROOT
5b3h_B5e-263327836269Protein SHORT-ROOT
5b3h_E5e-263327836269Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03454A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806480.10.0scarecrow-like protein 32
TrEMBLA0A3L6R9I70.0A0A3L6R9I7_PANMI; Uncharacterized protein
STRINGSi022117m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.15e-58GRAS family protein