PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03411A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YC
Protein Properties Length: 314aa    MW: 34739.9 Da    PI: 4.7084
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03411AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.69.9e-17151041198
                      NF-YC  11 ekatdfknhelPl.a.rikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                                 + +d+  +++ + + rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +tl    ++++++  +++dfl
  Oropetium_20150105_03411A  15 SRRKDYTTESVLImSpRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTLSSYHLKQCIQTYNVYDFL 98 
                                5556665444333124******************************************************************** PP

                      NF-YC  93 vdivpr 98 
                                +++v +
  Oropetium_20150105_03411A  99 TEVVSK 104
                                *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.0E-143189IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.2E-2131103IPR009072Histone-fold
SuperFamilySSF471133.43E-1836106IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRKKLDTRFP AVRMSRRKDY TTESVLIMSP RIKKIMQADE DVGKIALAVP VLVSKALELF  60
LQDLCDRTYD ITIRKGVKTL SSYHLKQCIQ TYNVYDFLTE VVSKVPDISS PDANADDKFG  120
KRKAAEDGSE EELKRTRNES ENHTSNGRGR GRGRGRGRRG GRGAGKECDM TSEKFEDQSS  180
KPVLKLEVTD EISDAMEAKE ATLSSSGRAC LRNIDLNLDP ADEDDVTVSL QIQSTAPTIS  240
SAASTAVPSV PQLNEHAMTA APSAAQSNEV VPKLKDFLGW QLPDMNEMTM DPVQYALSSN  300
YTLDEDEDYD DEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-17290575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147156RGRGRGRGRG
2147157RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03411A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961645.11e-115dr1-associated corepressor isoform X1
TrEMBLA0A0A9G0831e-123A0A0A9G083_ARUDO; Uncharacterized protein
STRINGPavir.J02260.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-45nuclear factor Y, subunit C11