PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03402A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 254aa MW: 28589.3 Da PI: 9.1216 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.6e-10 | 25 | 64 | 5 | 41 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k+ rr+++NReAAr+sR++Kka++e+Le+ k ++Le+e Oropetium_20150105_03402A 25 KALRRLAQNREAARKSRLKKKAYVEQLETsrlKLAQLEKE 64 778*************************833344444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-8 | 17 | 69 | No hit | No description |
SMART | SM00338 | 2.4E-6 | 19 | 84 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.634 | 23 | 67 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.63E-7 | 25 | 67 | No hit | No description |
Pfam | PF00170 | 1.1E-7 | 25 | 64 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 28 | 43 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.1E-12 | 108 | 164 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
FELGHLVARE VFGSGDKTKD ELGPKALRRL AQNREAARKS RLKKKAYVEQ LETSRLKLAQ 60 LEKELQRARQ QGIFISAPGN QAHSTCDDGT LAFETEYARW VEEHNKLINE LRAAVNAHAG 120 DDDLRRIVDC ITAHYRESFR LNGAAARADA FHLLASHLEP LTEQQLASIW SLQQSSQQAE 180 KVLSQGVEAL QQSADNLRFQ TLQQMQCILT SRQYARALLA ISDYFSRLRA LSSLWIARPR 240 PDMKSSVDPS VYS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03402A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807053.1 | 1e-117 | transcription factor HBP-1b(c1)-like | ||||
Swissprot | Q6IVC2 | 1e-106 | TGAL1_ORYSJ; Transcription factor TGAL1 | ||||
TrEMBL | A0A2T7EC78 | 1e-116 | A0A2T7EC78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05186.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25545 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 4e-92 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03402A |
Publications ? help Back to Top | |||
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