PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03362A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 481aa    MW: 51598.1 Da    PI: 6.6364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03362AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS258.62.3e-791144724373
                       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +L+ecA avs g+l  a+ +L +ls++asp++ +  +Rl+ayf++A+aarl++s+ +l++ lpp ++s    s   aa+++f++
  Oropetium_20150105_03362A 114 VLMECAVAVSVGNLVDANGMLLELSQTASPYApSCGERLVAYFARAMAARLVSSWVGLCAPLPPAPQS---CSGIHAAFRAFYN 194
                                79******************************8889***************************99999...8899999****** PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLak 167
                                vsP+++++hl++Nqa+leav+g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp  lR+Tg++     s+ +l+ tg++La 
  Oropetium_20150105_03362A 195 VSPLVRLAHLACNQAVLEAVHGKRLVHIVDLDMVPGgaLQWLSLLPALAARPGGPPaVLRVTGFSV----SAPALRDTGNQLAG 274
                                *********************************988447*************888879********....9************* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                +A++lg+pfef + vakr  d    ++  r +pgEa+aV++    h ++d  ++       +++l++ l+P+v+++veqe  h 
  Oropetium_20150105_03362A 275 LASKLGLPFEFCA-VAKRPGDAAAADFvpRKRPGEAVAVHWLR--HAMYDAAGDDGA----TVRLLRWLEPRVLTLVEQERGH- 350
                                *************.6887777777777344455********98..778755555555....**********************. PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                +++Fl+rf+++l++          + p+++   r+ vE  +lgrei+nv+a  g +r  r + ++ W+  l   GF  +  + +
  Oropetium_20150105_03362A 351 GGNFLDRFVSTLHHXXXXXXXXXXSRPADEdASRHLVEDGVLGREITNVLAVGGPSRSGRDK-FGCWQTELAWHGFLRAGSGGR 433
                                789****************99977777776599***********************999987.*************99998887 PP

                       GRAS 333 aakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                                a    +ll   ++ + gy+v ++++  v lgWk+ +L++vS W
  Oropetium_20150105_03362A 434 A----QLLAGACPaGLGYTVADDQDGTVrLGWKGTSLYAVSTW 472
                                5....678888888889****88777766************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.7985455IPR005202Transcription factor GRAS
PfamPF035147.9E-77114472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MQFHEQYLYG GSSGATNLPL QHHHFLHHQQ QGSFQAGERF TTGKDHVPAQ QFADEPAAGE  60
AGELDLDLAA CSNREVVSDE XXXXXXXXXX XRTNSGAERG EEEEEARGVR MLVVLMECAV  120
AVSVGNLVDA NGMLLELSQT ASPYAPSCGE RLVAYFARAM AARLVSSWVG LCAPLPPAPQ  180
SCSGIHAAFR AFYNVSPLVR LAHLACNQAV LEAVHGKRLV HIVDLDMVPG GALQWLSLLP  240
ALAARPGGPP AVLRVTGFSV SAPALRDTGN QLAGLASKLG LPFEFCAVAK RPGDAAAADF  300
VPRKRPGEAV AVHWLRHAMY DAAGDDGATV RLLRWLEPRV LTLVEQERGH GGNFLDRFVS  360
TLHHXXXXXX XXXXSRPADE DASRHLVEDG VLGREITNVL AVGGPSRSGR DKFGCWQTEL  420
AWHGFLRAGS GGRAQLLAGA CPAGLGYTVA DDQDGTVRLG WKGTSLYAVS TWYPTPHAQR  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-98984748380Protein SCARECROW
5b3h_A3e-98984747379Protein SCARECROW
5b3h_D3e-98984747379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03362A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806715.10.0protein SCARECROW-like
TrEMBLA0A3L6RDI50.0A0A3L6RDI5_PANMI; Protein scarecrow-like
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-85GRAS family protein