PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03203A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 307aa    MW: 34591.1 Da    PI: 9.8016
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03203AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.8e-3163113151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+g+lyeys+
  Oropetium_20150105_03203A  63 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIIFSSRGRLYEYSN 113
                                79***********************************************95 PP
2K-box89.46.9e-301332285100
                      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                s   ++e + ++++qe+akLk++i +Lq+++R l G+++ ++s ++L++Le +L+k+l kiR++Knell++++e++ ++e elq
  Oropetium_20150105_03203A 133 SAGTTAEITIQHYKQESAKLKQQITTLQNSNRTLTGDGIATMSQRDLKHLEGRLDKGLAKIRARKNELLYSEVEYMERREMELQ 216
                                4444788899************************************************************************** PP

                      K-box  89 eenkaLrkklee 100
                                ++n +L++++ee
  Oropetium_20150105_03203A 217 NDNLYLKSRVEE 228
                                *******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-3755114IPR002100Transcription factor, MADS-box
CDDcd002656.72E-4155132No hitNo description
PRINTSPR004042.3E-305777IPR002100Transcription factor, MADS-box
PROSITE patternPS00350057111IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-3158131IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.48759115IPR002100Transcription factor, MADS-box
PfamPF003194.6E-2664111IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-307792IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-3092113IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.589142232IPR002487Transcription factor, K-box
PfamPF014861.5E-22142226IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MHIQEIQQPV PSTDDFMSTL TSVGLKLKDP MPSPGSASAA GPASAAAAAE KATGGKGKKV  60
EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEIALI IFSSRGRLYE YSNSSVRAAI  120
ERYKKVTSSD SSSAGTTAEI TIQHYKQESA KLKQQITTLQ NSNRTLTGDG IATMSQRDLK  180
HLEGRLDKGL AKIRARKNEL LYSEVEYMER REMELQNDNL YLKSRVEENE RAKQTANMMG  240
APSTSEYQQQ SFLPYDPIRS FLQFNIMQQQ QQTPPPQPPQ YYSQQQRQEE DDRKVLNLGK  300
ILRHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-1958136482Myocyte-specific enhancer factor 2B
1tqe_Q4e-1958136482Myocyte-specific enhancer factor 2B
1tqe_R4e-1958136482Myocyte-specific enhancer factor 2B
1tqe_S4e-1958136482Myocyte-specific enhancer factor 2B
6c9l_A4e-1958136482Myocyte-specific enhancer factor 2B
6c9l_B4e-1958136482Myocyte-specific enhancer factor 2B
6c9l_C4e-1958136482Myocyte-specific enhancer factor 2B
6c9l_D4e-1958136482Myocyte-specific enhancer factor 2B
6c9l_E4e-1958136482Myocyte-specific enhancer factor 2B
6c9l_F4e-1958136482Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03203A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302806.11e-147MADS-box transcription factor 3-like isoform X3
SwissprotQ2V0P11e-118MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A1B6P7D01e-146A0A1B6P7D0_SORBI; Uncharacterized protein
STRINGGRMZM2G052890_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  7. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  8. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  9. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]