PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03172A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 282aa MW: 31860.8 Da PI: 8.1917

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03172A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.1	5.2e-34	46	192	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 +p+G++F+P+d+el+ ++L+ v+++ ++++ +i+ +i++++P++Lp v+ + + +fF+ +k+y++g+rk+r Oropetium_20150105_03172A 46 MPAGVKFDPSDQELI-HHLQTMVDEEGsrahplIDEFIpTIRGEdGICYTHPENLP-GVRRDGVSKHFFHMPSKAYTNGTRKRR 127 699**********.99*99996665443333333666646******.566667789************** PP NAM 77 a............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Oropetium_20150105_03172A 128 RihaqrdhnssdnVTETRWHKTGKTRPVIV-GGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 192 769999999999866799********.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-36	39	210	IPR003441	NAC domain
PROSITE profile	PS51005	30.849	46	210	IPR003441	NAC domain
Pfam	PF02365	7.8E-15	47	192	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEHQGSKISS SSSELTDGKL ESRVFSLRCC PSCGHEIDCN KDMIGMPAGV KFDPSDQELI 60 HHLQTMVDEE GSRAHPLIDE FIPTIRGEDG ICYTHPENLP GVRRDGVSKH FFHMPSKAYT 120 NGTRKRRRIH AQRDHNSSDN VTETRWHKTG KTRPVIVGGR QKGCKKILVL YTNFGKHRKP 180 EKTNWVMHQY HLGDQEEKDG ELVVSKVFYQ TQTRQHVATA VAERMEGKQT SEAIQDMCSG 240 CAATNTKSAV AMMQQQQWTS QADGQFSDAH SKKRCHDHEF I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	127	RKRRR
2	124	128	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03172A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808650.1	1e-122	NAC domain-containing protein 10-like isoform X2
Swissprot	Q9M0F8	1e-97	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1E5W3H8	1e-122	A0A1E5W3H8_9POAL; NAC domain-containing protein 73
STRING	Pavir.J36494.1.p	1e-121	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-100	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03172A

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]