PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03052A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 25690.4 Da PI: 8.6248 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.5 | 7e-17 | 107 | 161 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 l ++++++r d+++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela++++ Oropetium_20150105_03052A 107 LLEVQQSQRADTANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELAAVRAD 161 668899********************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.997 | 61 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-15 | 107 | 159 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSTASQWQDH ELGKKIIKRE SEAAVADRMT AAARRSCSGL PAAAGAGAAG AGPGSALNTI 60 TPCAACKLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLLEV QQSQRADTAN 120 SLVYEANLRL RDPVYGCMGA ILTLQQQVQA LEAELAAVRA DIVRHRYRPA AASAVLPSSH 180 ASQLLAAARG LPAARADGGA RTTATLAVGS AVGPAASSSS SSTVYAAASN STDYSSITNE 240 NVPYFG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03052A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-121 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167556.1 | 3e-80 | LOB domain-containing protein 15-like | ||||
TrEMBL | A0A3B5ZSF7 | 6e-79 | A0A3B5ZSF7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452Y3X4 | 9e-79 | A0A452Y3X4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1DS_BB8508CC6.1 | 1e-79 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-22 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03052A |