PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02993A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 119aa    MW: 13113.9 Da    PI: 11.3685
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02993AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA24.14.9e-087212135
                       GATA 21 tLCnaCGlyyrkkgl 35
                               +LCnaCG++yrkk++
  Oropetium_20150105_02993A  7 SLCNACGIRYRKKRR 21
                               6***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.3E-4722IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MITVAASLCN ACGIRYRKKR RQELGLDNKQ QPKQQAQQEQ QQPAQASLPQ QQQRRQHLQR  60
DLSEGTGSVK DSSSTTSTTK RSSLQVVKKR RVLMGVEEAA ILLMALSSSS RSPTLLHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02993A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655008.11e-23PREDICTED: GATA transcription factor 23-like
RefseqXP_015692844.11e-23PREDICTED: GATA transcription factor 23-like
TrEMBLA0A0A9C9F27e-24A0A0A9C9F2_ARUDO; Uncharacterized protein
STRINGPavir.Ea01306.1.p3e-23(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854