PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_02993A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 119aa MW: 13113.9 Da PI: 11.3685 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 24.1 | 4.9e-08 | 7 | 21 | 21 | 35 |
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++yrkk++ Oropetium_20150105_02993A 7 SLCNACGIRYRKKRR 21 6***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-4 | 7 | 22 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 119 aa Download sequence Send to blast |
MITVAASLCN ACGIRYRKKR RQELGLDNKQ QPKQQAQQEQ QQPAQASLPQ QQQRRQHLQR 60 DLSEGTGSVK DSSSTTSTTK RSSLQVVKKR RVLMGVEEAA ILLMALSSSS RSPTLLHG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_02993A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655008.1 | 1e-23 | PREDICTED: GATA transcription factor 23-like | ||||
Refseq | XP_015692844.1 | 1e-23 | PREDICTED: GATA transcription factor 23-like | ||||
TrEMBL | A0A0A9C9F2 | 7e-24 | A0A0A9C9F2_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ea01306.1.p | 3e-23 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_02993A |