PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02978A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 303aa    MW: 33842.9 Da    PI: 10.515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02978AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.67.8e-26128224185
                                EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHH CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvk 70 
                                f+k+ tpsdv++++rlv+pk +ae+h           gg+   ++ lt+ed  g   ++W+++++y+ +s++yvlt+GW++Fv+
  Oropetium_20150105_02978A 128 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplirdhqndGGS--DPVLLTFEDAAGgnkKVWRFRYSYWSSSQSYVLTRGWSRFVR 209
                                89*****************************999876444..7889*****9999***************************** PP

                                HHT--TT-EEEEEE- CS
                         B3  71 angLkegDfvvFkld 85 
                                ++gL +gD+v F+  
  Oropetium_20150105_02978A 210 EKGLAAGDTVAFSKA 224
                                ************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-32121237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-25124223IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-18127221No hitNo description
SMARTSM010193.9E-17128237IPR003340B3 DNA binding domain
PfamPF023621.2E-22128225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605128239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAVAAPATSR AAPSSRFKGV VPQPNGRWGA QIYERHXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXTY DDELQQGLRG RRAGTPAAAP  120
PPRRVLLFEK AVTPSDVGRL NRLVVPKVHA EKHFPPLIRD HQNDGGSDPV LLTFEDAAGG  180
NKKVWRFRYS YWSSSQSYVL TRGWSRFVRE KGLAAGDTVA FSKAAAADGQ TTMCDNKRRM  240
FIECRKRKRI RKDDGGGSSI VIDDDDVRHE GKRIVRLFGA NIAAAALGVH AYIETTHCEA  300
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-3812723313112DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236248KRRMFIECRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02978A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.11e-68AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS73e-55Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2T7E8E68e-70A0A2T7E8E6_9POAL; Uncharacterized protein
TrEMBLA0A3L6R5X13e-69A0A3L6R5X1_PANMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.17e-39related to ABI3/VP1 1