PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02902A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 27998.8 Da PI: 4.6166 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.6e-18 | 52 | 105 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Oropetium_20150105_02902A 52 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 105 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.5e-38 | 50 | 143 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal+++ e+L++e Oropetium_20150105_02902A 50 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDRVEALKQE 133 69*****************9999************************************************************* PP HD-ZIP_I/II 84 veeLreelke 93 + +L+++l+e Oropetium_20150105_02902A 134 KVALATQLDE 143 *****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-17 | 39 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 46 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-17 | 49 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.25E-16 | 51 | 108 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 52 | 105 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 52 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.2E-7 | 78 | 87 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-7 | 87 | 103 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.9E-13 | 107 | 148 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDQFLVPPPP AHQYEDQFLH PLMTMVGDDP DLAGGGSSSA AGARAGGSGE RKRRFTEEQV 60 RSLETTFHAR RAKLEPREKA ELARELGLQP RQVAIWFQNK RARWRSKQLE HDYADLRARY 120 DALRDRVEAL KQEKVALATQ LDELKGRLNE LQDQSASCDV VVTGGTASEA NDGKRDYNTT 180 ATNNSSAVSS QDDTAAMAPA AVTTSEDSTA AAAEGYYDYD DHVAYGWGLP VDPFCNPPEL 240 WDTWPLLEWN AVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02902A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063685 | 1e-100 | AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence. | |||
GenBank | AK287604 | 1e-100 | AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence. | |||
GenBank | EU847515 | 1e-100 | EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151825.1 | 8e-90 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | A2X7U1 | 3e-86 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | A0A1E5W7L4 | 3e-92 | A0A1E5W7L4_9POAL; Homeobox-leucine zipper protein HOX24 | ||||
STRING | GRMZM2G117164_P01 | 1e-89 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 5e-27 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02902A |