PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02870A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 32706.1 Da PI: 4.904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.8e-15 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l d + ++G g+W++ +++ g++R +k+c++rw +yl Oropetium_20150105_02870A 11 KGLWSPDEDEKLRDFILRYGHGCWSALPAKAGLNRNGKSCRLRWINYL 58 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 65 | 109 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +T+eE++ +++ lG++ W++Iar+++ gRt++++k++w++yl Oropetium_20150105_02870A 65 GMFTPEEEDTVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 109 569******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.066 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-29 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-12 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.29E-10 | 14 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.094 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 65 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-15 | 65 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.04E-12 | 67 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
ACEKPKPNYR KGLWSPDEDE KLRDFILRYG HGCWSALPAK AGLNRNGKSC RLRWINYLRP 60 GLKHGMFTPE EEDTVMSLHA ALGNKWSRIA RHLPGRTDNE VKNYWNSYLK KRVEGSSKEA 120 GPSTPAPTAT NSSADSDDSH CAMSGDDDGT AAVPEPPTDS GLSEPRESSS ADSSCLTGPH 180 PACRPHAPLA APKVMFADWL DMDYISGQVA AVAAPGLDAV IGASASANPG DQRQGSVQQQ 240 QQQQVDGPCS GFDVSSMSTS LHGGFGDSGA GCWEFQEQFD GMDQMQTAGA FCDLLSMSDF 300 FAGLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 7 | 114 | 3 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02870A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679412 | 1e-137 | HF679412.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB6 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953256.1 | 1e-144 | transcription factor MYB4 | ||||
TrEMBL | K3YUK1 | 1e-143 | K3YUK1_SETIT; Uncharacterized protein | ||||
STRING | Si017947m | 1e-144 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 4e-56 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02870A |