PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02810A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | ARF | ||||||||
Protein Properties | Length: 676aa MW: 73259.3 Da PI: 8.7825 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.2 | 9.5e-21 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f k+lt+sd+++ g +++p+ +ae++ ++ +g W++++iyr++++r++lt+GW+ Fv++++L +gD Oropetium_20150105_02810A 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADP-XXXXXXXXXXHGAAWKFRHIYRGTPRRHLLTTGWSTFVNSKKLVAGD 206 89***************************9984444.445788899************************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 ++vF + +++ l+v+++r+ Oropetium_20150105_02810A 207 SIVFL--RGDGGDLHVGIRRA 225 *****..3488999*****97 PP | |||||||
2 | Auxin_resp | 113.9 | 1.5e-37 | 279 | 361 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + as +++Fev Y+Prast+eF+v+++ v++a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dpvrWp+S+Wr+L+ Oropetium_20150105_02810A 279 TRLASAGQPFEVAYYPRASTPEFCVRAAAVRAATRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVADPVRWPQSPWRLLQ 361 678999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-32 | 120 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-24 | 122 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-17 | 123 | 224 | No hit | No description |
PROSITE profile | PS50863 | 11.815 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-15 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-18 | 124 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-32 | 278 | 361 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 11.121 | 611 | 675 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MITFADLTAP AAAAGERFVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HAGLSGAADL 60 SAAAALVPPL VPCRVAAVRY MADQDTDEVF ARIRLVPLLR SGXXXXXXXX XXXXXXXXXK 120 PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYAADPX XXXXXXXXXH GAAWKFRHIY 180 RGTPRRHLLT TGWSTFVNSK KLVAGDSIVF LRGDGGDLHV GIRRAKRGGF CGGRGDEVAG 240 WDPYNAGLMM RGGNVPPCGG AVKARRANKV RPEDVIEATR LASAGQPFEV AYYPRASTPE 300 FCVRAAAVRA ATRVQWSPGM RFKMAFETED SSRISWFMGT VAGVQVADPV RWPQSPWRLL 360 QVSWDEPDLL QNVKRVSPWL VELVSSIPAI HLASYSPPPK KARRPYPAEF PFEGQLLNPA 420 FPPNPLAHPA HHHPFFHAHP PPFFPFPDGS AHAAIQGARH PQPQSVPSLP DIYLQPSLLY 480 PGLRHPDHVG PTPARINTDL TIGGGTESPR DDVPCALSVG AKRKPDNAVK PAGLMLFGQT 540 ILTGQQMSLS GTTSPAATRT TSSLYWNAEK GGANVSSEGS GSGVIQNSPT NKQASSEQRQ 600 WFMDDHLSEP AGQCKVFMES DTVGRNLDLS SLGSFDELYG RLSEMFCVES AELRSRVLYR 660 GATGQVKHAG DEAFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-72 | 19 | 382 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02810A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955385 | 0.0 | EU955385.1 Zea mays clone 1530377 mRNA sequence. | |||
GenBank | HM004530 | 0.0 | HM004530.1 Zea mays auxin response factor 15 (ARF15) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953169.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q6K223 | 0.0 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | A0A368PP63 | 0.0 | A0A368PP63_SETIT; Auxin response factor | ||||
STRING | Si016509m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 1e-152 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02810A |