PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02638A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 423aa MW: 46833.7 Da PI: 4.8268 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.6 | 5.4e-28 | 57 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+P+d +l+ ++L++k+ ++++ + +++ +i++++P++Lp +k++ + ++fF++ +k+y g+rk+r Oropetium_20150105_02638A 57 LPAGVKFDPSDLQLL-QHLERKIGLGGlephvfIDEFIAtVENDeGINYSHPENLP-GMKKDGSTVHFFHQVSKAYGCGQRKRR 138 799************.99****988886666543332232332236**********.67788899******************* PP NAM 77 a..........tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + ++ +W++tg++k++++ +g ++g kk+Lv+yk r k+e++ Wvmh+y+l Oropetium_20150105_02638A 139 KvtacidrivsDENLRWHKTGRSKPIYD-NGVKKGWKKILVLYKTlqRGGKAERAPWVMHQYHL 201 6577777766544788************.999***********7533778889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-34 | 42 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.085 | 57 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-11 | 58 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MARYWLTNGR GIAKKIRNAT QCADRQINEL GAEAQMECPN CKHCIDNSDV AVQWPGLPAG 60 VKFDPSDLQL LQHLERKIGL GGLEPHVFID EFIATVENDE GINYSHPENL PGMKKDGSTV 120 HFFHQVSKAY GCGQRKRRKV TACIDRIVSD ENLRWHKTGR SKPIYDNGVK KGWKKILVLY 180 KTLQRGGKAE RAPWVMHQYH LGEEEDEKDG ELVVSKVFYQ TATKHMENAE TEIGDEGPGA 240 CAAGIGPKTP KTNTPQPRRA NNSPCETEQN ASILLDQDEE LTIPIDGPDD DGVGNSSWCT 300 REVPAVAVGE ASRAQPILDE SLLCLEDPAS LNDETLLPLD YPILSQCRNE MLDSNLNAFY 360 GLPDLNGVDL GTPPDLQLSV SLFVPLVLSY LCNKSEHASL FLVLRQDIQF GSQDSIGSWL 420 DW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02638A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149204.1 | 0.0 | uncharacterized protein LOC100282826 | ||||
Refseq | XP_008677272.1 | 0.0 | putative NAC domain transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-80 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QEE7 | 0.0 | A0A3L6QEE7_PANMI; NAC domain-containing protein 73-like | ||||
STRING | Pavir.Aa01341.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 1e-78 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02638A |