PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02287A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | G2-like | ||||||||
Protein Properties | Length: 328aa MW: 33997.2 Da PI: 10.9444 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.2 | 4.4e-29 | 260 | 309 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Oropetium_20150105_02287A 260 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 309 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.02E-13 | 257 | 312 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 258 | 310 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-21 | 260 | 310 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-5 | 261 | 309 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEAAASAPDL SLHISLPSSN AAGPPSSSAP GLAAGVAAGR GAAAAGGGDP WRWLNGSTAS 60 TELSLSPPPP PRMELGGAGA LLPPWRLRPP TVAANNNSPS SNSSSTAAFL PVTVPRLSLD 120 AATAVEAARA RPINGVPVYS SSPAAAAGSG GFLGAAAGDY RQRHHPKAGL YNPYHPSSAA 180 WPSSLRSSAS TTPASVDHSF LSPSAYHRML SGTGRLHLHA ADTLRAGYGG NQHQHFGGSL 240 ASSRFYMPRL PASRRGMRAP RMRWTSTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT 300 LAHVKSHLQA RYLSTLLPPN VSDREEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 261 | 312 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 261 | 312 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 261 | 312 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 261 | 312 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 261 | 312 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02287A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ286528 | 1e-91 | DQ286528.1 Zea mays KANADI1-like protein (kan1b) mRNA, partial cds. | |||
GenBank | EU935003 | 1e-91 | EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds. | |||
GenBank | JX469982 | 1e-91 | JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820100.1 | 4e-98 | probable transcription factor RL9 isoform X2 | ||||
Swissprot | Q0J235 | 1e-43 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A3L6RKZ8 | 1e-105 | A0A3L6RKZ8_PANMI; Putative transcription factor RL9 | ||||
STRING | Pavir.Fb00812.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 5e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02287A |