PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_02254A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 492aa MW: 51974.2 Da PI: 6.7954

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_02254A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	96	142	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L +++e++k+L Oropetium_20150105_02254A 96 RSHSEAERRRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVIEHVKEL 142 78***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.047	93	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-14	96	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.75E-14	96	145	No hit	No description
Pfam	PF00010	5.4E-12	96	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-15	97	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-14	99	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.98E-5	190	240	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.0E-6	190	241	No hit	No description
Gene3D	G3DSA:3.30.1390.10	4.6E-28	392	487	IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
SuperFamily	SSF54736	1.1E-21	407	486	IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
Pfam	PF02617	4.7E-17	411	477	IPR003769	Adaptor protein ClpS, core

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030163	Biological Process	protein catabolic process
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MGPLAPPPGP FGGAADAGPP GPFAFGVDGS GAGAGGLVGM FGLDPSSSSQ SQHHGMAAPP 60 PQYNGVVSGL LGTLQAELGR MTAKEIMDAK ALAASRSHSE AERRRRQRIN GHLAKLRSLL 120 PNTTKTDKAS LLAEVIEHVK ELKRQTSAVL GAAPDQQQRH HHLHLLPTES DELAVEAAED 180 ADGMLVVRAS LCCEDRAGLI PDIARALAAL RLRAHRAEIA TLGGRVRNVL LITAADDDHQ 240 DQEDGRPAEQ GDNDDDVDGG EGDNDDERAA SHRRHELVAS VQEALRGVMD RKGAASSDTS 300 ESSGSGSLIK RQRMSGGGAH EQGQQGSDRG DGGGMEATRI TLSAASVFQT RRAAAGHRCS 360 FYKERCQSLA VPMALAAVAS GKQGGVIDRP VEKVNPGRQS EFDVKKKRKM TPPYRVILHN 420 DNYNRREYVV QVLMKVIPGM TVDNAVNIMQ EAHVNGLSVV IICSQSEAEE HCTSLRGNGL 480 RSSIEPASGG C*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MGPLAPPPGP FGGAADAGPP GPFAFGVDGS GAGAGGLVGM FGLDPSSSSQ SQHHGMAAPP  60
PQYNGVVSGL LGTLQAELGR MTAKEIMDAK ALAASRSHSE AERRRRQRIN GHLAKLRSLL  120
PNTTKTDKAS LLAEVIEHVK ELKRQTSAVL GAAPDQQQRH HHLHLLPTES DELAVEAAED  180
ADGMLVVRAS LCCEDRAGLI PDIARALAAL RLRAHRAEIA TLGGRVRNVL LITAADDDHQ  240
DQEDGRPAEQ GDNDDDVDGG EGDNDDERAA SHRRHELVAS VQEALRGVMD RKGAASSDTS  300
ESSGSGSLIK RQRMSGGGAH EQGQQGSDRG DGGGMEATRI TLSAASVFQT RRAAAGHRCS  360
FYKERCQSLA VPMALAAVAS GKQGGVIDRP VEKVNPGRQS EFDVKKKRKM TPPYRVILHN  420
DNYNRREYVV QVLMKVIPGM TVDNAVNIMQ EAHVNGLSVV IICSQSEAEE HCTSLRGNGL  480
RSSIEPASGG C*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_02254A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020402268.1	4e-99	transcription factor bHLH30
Swissprot	Q9S7Y1	3e-61	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1D6KP73	9e-98	A0A1D6KP73_MAIZE; Transcription factor AIG1
TrEMBL	A0A317Y751	4e-99	A0A317Y751_MAIZE; Transcription factor bHLH30
STRING	Sb07g021170.1	1e-93	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_02254A

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]