PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02250A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 288aa    MW: 31952.8 Da    PI: 6.2351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02250AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-0920442348
                               -HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                               +W++Ia +++ +Rt++++k++w+++l
  Oropetium_20150105_02250A 20 RWSAIATHLP-KRTDNEIKNYWNTHL 44
                               5*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.436148IPR017930Myb domain
SuperFamilySSF466896.55E-81952IPR009057Homeodomain-like
CDDcd001671.24E-62044No hitNo description
Gene3DG3DSA:1.10.10.605.1E-132055IPR009057Homeodomain-like
PfamPF002492.7E-72044IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MPMCHFQTIK SKSCFLRLFR WSAIATHLPK RTDNEIKNYW NTHLKKRLAK MGIDPVTHKA  60
NGALTGTTND KSAKAAASLS HMAQWESARL EAEARLAQES KMRTSASSST ALYSQSTNLP  120
ASAAASPCLD VLHALQGQKV DLESPTSTLT FTGSKSSLMP TPRTNILEIS ESNSMIWHQG  180
SDELDVEESN WQFLSKQQGL VLDGKEKEEN LIGCEESWFT XXXXXXXXXX XXXXXXXXXX  240
DTSECWGESN IAQTEHSSQA SHEDNNYWNG ILGIVNSELP IQSSKLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02250A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444392.11e-126transcription factor MYB106
TrEMBLA0A0A9F8E61e-135A0A0A9F8E6_ARUDO; Uncharacterized protein
STRINGSb07g021210.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.13e-27myb domain protein 106