PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02244A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 39730.4 Da PI: 8.3688 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 75 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l d+v+++G+++W++Ia+++ gR++k+c++rw++ Oropetium_20150105_02244A 75 RGHWRPAEDAKLRDLVALHGPHNWNLIAEKLD-GRSGKSCRLRWFNQ 120 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 128 | 170 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ Oropetium_20150105_02244A 128 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 170 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.638 | 70 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-14 | 74 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-16 | 75 | 120 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-28 | 75 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 76 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-13 | 78 | 119 | No hit | No description |
PROSITE profile | PS51294 | 24.91 | 122 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 126 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-13 | 127 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.58E-11 | 129 | 169 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 129 | 175 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MPCSSPPPPW LLRVGSAAAT DQQQXXXXXX XXXXGRVLTA GTTTMDDTGG GGATAAADHQ 60 ESSSSGQSRL AAAARGHWRP AEDAKLRDLV ALHGPHNWNL IAEKLDGRSG KSCRLRWFNQ 120 LDPRISKRPF SDEEEERLMA AHRFYGNKWA MIARLFPGRT DNAVKNHWHV IMARKYREQS 180 TAYRRRKLNQ AVQRKLEASV ATTMTPAAAG DAIVVGHHHL LAHDDAADPY GFALRHYCSF 240 VPLPPAGAEE PPPPPFCLFP GLPGAAHADR RLLLPWQHPP DAVLGRGGVV DARYGAEQPP 300 PPPPPLLLPL TVPSAWMDRG HLEPPQFISE PAAAAFAGTA AARDDASGTH SAAPPPPAFI 360 DFLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 75 | 175 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02244A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354272.1 | 1e-124 | uncharacterized protein LOC100273887 | ||||
TrEMBL | A0A1D6KP30 | 1e-123 | A0A1D6KP30_MAIZE; Myb domain protein 105 | ||||
TrEMBL | A0A317Y6G8 | 1e-123 | A0A317Y6G8_MAIZE; Transcription factor MYB105 | ||||
TrEMBL | A0A3L6RKT7 | 1e-123 | A0A3L6RKT7_PANMI; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G428555_P03 | 1e-124 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-71 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02244A |