PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02233A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27780.7 Da PI: 7.949 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 4.8e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wk Oropetium_20150105_02233A 16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWK 98 689***************************.89***************9888999***************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+d++++s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl Oropetium_20150105_02233A 99 ATGTDRPIYSSeSTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143 **********855666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-55 | 15 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.401 | 16 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MELKNDVSMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE STKCIGLKKS 120 LVFYKGRAAR GMKTDWMMHE FRLPSPSDPS LPKRPIDKNI PLNVSIISTA EAEMFSAFQT 180 VQASEFALES SSCSLQVAPP EPSSQFMSRH GLQDSEEWRC NIPWDSFLSP AAVQIQTELP 240 H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-50 | 16 | 147 | 17 | 146 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-50 | 16 | 147 | 17 | 146 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-50 | 16 | 147 | 17 | 146 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-50 | 16 | 147 | 17 | 146 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swm_B | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swm_C | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swm_D | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swp_A | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swp_B | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swp_C | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
3swp_D | 4e-50 | 16 | 147 | 20 | 149 | NAC domain-containing protein 19 |
4dul_A | 3e-50 | 16 | 147 | 17 | 146 | NAC domain-containing protein 19 |
4dul_B | 3e-50 | 16 | 147 | 17 | 146 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02233A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683500.1 | 1e-136 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-85 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A3L6PQ10 | 1e-136 | A0A3L6PQ10_PANMI; Protein FEZ-like | ||||
STRING | Si015514m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 7e-88 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02233A |
Publications ? help Back to Top | |||
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