PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02228A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 388aa MW: 40478.4 Da PI: 7.5281 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.7 | 6.6e-29 | 43 | 97 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gt.aaalkCaACgCHRnFHRrev 57 +Y eCl+NhAas Gg++vDGCgEfmp++ ++ aa+l+CaACgCHR+FHRr Oropetium_20150105_02228A 43 VYLECLRNHAASAGGYVVDGCGEFMPAPAGLaADpAASLRCAACGCHRSFHRRVI 97 79*************************87765444789***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-13 | 7 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.1E-25 | 44 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.712 | 44 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.2E-25 | 44 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.79E-15 | 237 | 301 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 237 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.1E-24 | 243 | 299 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MEAVVDVKYR PALYRYGGMV EPTKFGSPAS ATAWGEAIET PGVYLECLRN HAASAGGYVV 60 DGCGEFMPAP AGLAADPAAS LRCAACGCHR SFHRRVITEI GPPLSSSPPP RLALLPAPPA 120 PSAVVAAAAP HLRRGEGPPE GHAPAADGWD ETDEESSDYD DGAGRPMSPL QAPAPAVAPP 180 SGGYVLAPAP PLTLLPSLNT VAPAASVTSP ASASALAAAS SRPPAPAPQG IIMVPGGSLA 240 AARKRFRTKF SPEQKQRMRE LSERLGWRLQ KRDEAAVEDC CREIGVARSV FKVWMHNNKH 300 NFVDGNSARR AASSAPVASM PVPVPAAPVQ XXXXXXXXXX XXXXXXXXXX XXVVHADFNI 360 NNSGAADYYV LQPVIATTMS GGAPQHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-21 | 244 | 301 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02228A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288007 | 3e-65 | AK288007.1 Oryza sativa Japonica Group cDNA, clone: J075112P06, full insert sequence. | |||
GenBank | AP004702 | 3e-65 | AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03. | |||
GenBank | AP005159 | 3e-65 | AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11. | |||
GenBank | AP014964 | 3e-65 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 3e-65 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | EU964070 | 3e-65 | EU964070.1 Zea mays clone 275696 ZF-HD homeobox protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q6Z528 | 9e-59 | ZHD10_ORYSJ; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | A0A0A8ZJE7 | 4e-78 | A0A0A8ZJE7_ARUDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-23 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02228A |