PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02205A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 406aa    MW: 44855.1 Da    PI: 6.9972
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02205AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.8e-15151202155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Oropetium_20150105_02205A 151 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 202
                                89****99**********988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-446122IPR001471AP2/ERF domain
PROSITE profilePS5103211.29846116IPR001471AP2/ERF domain
PRINTSPR003675.4E-54758IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17151212IPR016177DNA-binding domain
CDDcd000183.78E-22151212No hitNo description
PfamPF008471.0E-9151201IPR001471AP2/ERF domain
SMARTSM003805.2E-26152216IPR001471AP2/ERF domain
PROSITE profilePS5103217.741152210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17152211IPR001471AP2/ERF domain
PRINTSPR003675.4E-5192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MARPRKNATA NDGSGTVAKS ELKRARKSAP APSRKCRPVQ ARRSSAFRGV TRHRWTGRFE  60
AHLWDKDTWN HESXXXXXXX XXGKQAGAYD DEEAXXXXXX XXXLKYWGPG TVLNFPLCSY  120
DEELKEMEGQ SREEYIGSVR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVLGNKYLYL  180
GTYATQEEAA VAYDIAAIEH RGLNAVTNFD VSHYFNWYRR RRLTERARAG ATTSGLNEPL  240
AATATFHDDD GEQHHIADSY ILPQLTVDDQ VATRTPPAHK APPSSPALDL LLLQSPRFME  300
IMEQVSAAAT DRSPSPCTSS LSSASLPSQA SPERRPESSG GASSSAAARC GFPDDVQTYF  360
GSDDDGMMSF AFAEEVDTFL FGDLGSYAAP MFQCDLHAFD VDSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222YRRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02205A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-133AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ94AN42e-80AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK3YHX31e-132K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-83AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]