PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02160A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24698.2 Da PI: 10.4238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg++ t+e+Aa+a++a ++k++g Oropetium_20150105_02160A 123 PYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYKTPEDAARAYDAEARKIRG 172 59*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-28 | 123 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 123 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.379 | 123 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.63E-26 | 124 | 175 | No hit | No description |
Pfam | PF00847 | 1.9E-11 | 124 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-27 | 124 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MCGGLAFSGL SMKPRASRIS TKPLAEVGKK RNQHTKIKNH GGWGRRRIRK VDEDDDDFEA 60 EFQAFSKTFD EMDENHDEFM ALRFFKDSSM DVSEPSKEDV VKHKPTEDDE STIVVLKRKR 120 KNPYRGIRRR PWGKWAAEIR DPRKGVRVWL GTYKTPEDAA RAYDAEARKI RGKKAKDVSL 180 ERMFSAQMTG FGLGLILLLL VIGRTLTSKP NHTDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-17 | 124 | 175 | 15 | 67 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 130 | KRKRKNPYRGIRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02160A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353801.1 | 3e-57 | uncharacterized protein LOC100384698 | ||||
TrEMBL | A0A1D6KNH4 | 8e-56 | A0A1D6KNH4_MAIZE; Ethylene-responsive transcription factor RAP2-2 | ||||
STRING | Sb07g022180.1 | 2e-56 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16850 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-23 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02160A |