PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02126A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YC
Protein Properties Length: 132aa    MW: 13903.6 Da    PI: 4.786
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02126AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC100.31.5e-31221101999
                      NF-YC  19 helPlarikkilka........dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                                h+lPlarikki+k         d   +mis eaPv++skacelfi elt r+w+ + e krrt++k d+a+av +td fdflvd
  Oropetium_20150105_02126A  22 HALPLARIKKIMKRsagetavgDGGARMISGEAPVVFSKACELFIAELTRRAWVSTLEGKRRTVHKEDVAEAVRNTDLFDFLVD 105
                                89***********63333333355689********************************************************* PP

                      NF-YC  95 ivprd 99 
                                 v + 
  Oropetium_20150105_02126A 106 LVATA 110
                                99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.87E-2518103IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.9E-311995IPR009072Histone-fold
PfamPF008082.0E-162494IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MRQARPYSGI FCGGVAARTG PHALPLARIK KIMKRSAGET AVGDGGARMI SGEAPVVFSK  60
ACELFIAELT RRAWVSTLEG KRRTVHKEDV AEAVRNTDLF DFLVDLVATA DDDDAGGNAP  120
AAGDDDEDAL D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-30221071693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02126A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2345021e-98HQ234502.1 Zea mays clone BAC ZMMBBb0342E21 DNA-binding protein, peroxisomal-CoA synthetase, cleavage and polyadenylation specificity factor 5, DNA mismatch repair protein, and putative potassium efflux system protein family genes, complete cds; and unknown gene.
GenBankKJ7270091e-98KJ727009.1 Zea mays clone pUT3990 CCAAT-HAP5 transcription factor (CA5P1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825631.13e-66nuclear transcription factor Y subunit C-2-like
SwissprotQ655V56e-31NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2S3IBP58e-65A0A2S3IBP5_9POAL; Uncharacterized protein
TrEMBLA0A2T7D1W58e-65A0A2T7D1W5_9POAL; Uncharacterized protein
TrEMBLA0A3L6PUG08e-65A0A3L6PUG0_PANMI; Nuclear transcription factor Y subunit C-2-like
STRINGPavir.Ga00522.1.p2e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-28nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]