PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02075A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 30999.6 Da PI: 6.5211 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4e-09 | 15 | 62 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45 g WT e ++ + +av+ g+ W++Ia+ + g+t+++++ ++ Oropetium_20150105_02075A 15 GTWTREQEKAFENAVATVVGDeegdaMWEKIAKLVE-GKTAEEVRQHYE 62 78****************999***************.**********95 PP | |||||||
2 | Myb_DNA-binding | 39.8 | 1e-12 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Oropetium_20150105_02075A 125 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 169 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.615 | 12 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-4 | 13 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-5 | 15 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-7 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-7 | 16 | 65 | No hit | No description |
SuperFamily | SSF46689 | 1.0E-8 | 17 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.605 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-16 | 120 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 122 | 172 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.6E-17 | 122 | 172 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.98E-10 | 125 | 170 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-11 | 125 | 168 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-11 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAVEEASSSG EEGAGTWTRE QEKAFENAVA TVVGDEEGDA MWEKIAKLVE GKTAEEVRQH 60 YELLVEDVDG IEAGRVPLPT YAGXXXXXXX XXXXXSGKKG SGGGGGHGDK GSAKSAEQER 120 RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRER 180 RRSSIHDITS VNNGDASAAQ GPITGTNGQV TNPGKSSKQT PTAANTPPGV DAYGTTIGQP 240 VGGPLVSAVG TPVPTPPHMT YGMHAPVPGA VVPGAPVNMA PMPYPMPPPP SHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 17 | 81 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02075A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448771.1 | 1e-149 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-98 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | C5YAI2 | 1e-148 | C5YAI2_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032880.1 | 1e-149 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-81 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02075A |
Publications ? help Back to Top | |||
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