PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01917A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | AP2 | ||||||||
Protein Properties | Length: 415aa MW: 44306.7 Da PI: 6.7965 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 1.9e-11 | 134 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Oropetium_20150105_01917A 134 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 190 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 48.4 | 2.3e-15 | 233 | 284 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Oropetium_20150105_01917A 233 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 284 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.19E-18 | 134 | 200 | No hit | No description |
Pfam | PF00847 | 6.6E-9 | 134 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-15 | 134 | 199 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-21 | 135 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.372 | 135 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-12 | 135 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 136 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-18 | 233 | 294 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-10 | 233 | 284 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.09E-24 | 233 | 294 | No hit | No description |
SMART | SM00380 | 2.1E-33 | 234 | 298 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 234 | 292 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-18 | 234 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 274 | 294 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MDTSHNYPWL NFSLAHHCDL EEQERGAAAE LAAIAGAAPP PKLEDFLGGG NNHQVSGGAA 60 TTAPPAPEMY DSELKFIAAG FLSGAAGPXX XXXXXXXXSP LDQADAKLAL PAAAAAAPAQ 120 EQRKAVDSFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA 180 YDLAALKYWG ATTTTNFPVA EYEKELEEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR 240 HHQHGRWQAR IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FEISRYNVES 300 IISSNLPIGS MSAGGRSTKG LECAASGSPD AAPMPGGEVS TAPTAFSALP VKYDQQQDYL 360 SMLALQHHQQ GNLQGLGFGL YSSGVNLDFA SSGGGGGGGG GALAHCYALS VEFL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01917A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318155.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-129 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1B6PNN9 | 0.0 | A0A1B6PNN9_SORBI; Uncharacterized protein | ||||
STRING | Sb06g031120.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-122 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01917A |
Publications ? help Back to Top | |||
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