PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01882A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 511aa    MW: 54398.5 Da    PI: 8.3116
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01882AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17116165155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Oropetium_20150105_01882A 116 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 165
                                78*******************......55************************997 PP
2AP2254.6e-082692972755
                        AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                ++++++lg f+t+eeAa+a+++a+ k +g
  Oropetium_20150105_01882A 269 RCRYVYLGLFDTEEEAARAYDRAAIKCNG 297
                                47**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.64E-11116172No hitNo description
SuperFamilySSF541711.31E-15116174IPR016177DNA-binding domain
PfamPF008476.0E-9116165IPR001471AP2/ERF domain
PROSITE profilePS5103217.701117173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-17117173IPR001471AP2/ERF domain
SMARTSM003802.4E-31117179IPR001471AP2/ERF domain
CDDcd000183.37E-19208307No hitNo description
PROSITE profilePS5103215.409209305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-14209230IPR001471AP2/ERF domain
SMARTSM003803.1E-26209311IPR001471AP2/ERF domain
PRINTSPR003677.0E-6210221IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-10265307IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-14269305IPR001471AP2/ERF domain
PfamPF008471.8E-4269297IPR001471AP2/ERF domain
PRINTSPR003677.0E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MWDLNDSPAA ETLSPSADDS GASSSSAAAH VDVPEXXXXX XXXXXRQFFP TPPALASAVG  60
AGSPNNNNAR AAWLRLAAVP PPPAVGNVAP AGGPAAAXXX XXXXXXXXXX XRSRSSQYRG  120
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYEGD  180
MKQMGNLSKE EFVHMLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKSVSFLPPS  240
LPLASGFQLL LVYAMRLTVV AISGSPVTRC RYVYLGLFDT EEEAARAYDR AAIKCNGKDA  300
VTNFDPSIYA EEMEPTSSAA AATTGGDEHN LDLSLGSSTG NKRVSLDGGG GGDEDSADQR  360
VPMAFDLDWQ TSGAARSTKA KVQQFEQNSK QAQMPPAAQH LSFNPRHHQQ FLGSGDPGTA  420
GGLSLAIGGG AGGGGHWPGP QQLLPQQQRL PHGWGNNAGS WPLPPYPASS SATAAATTAT  480
AAAASSRFPP YVTTQAPTSW NGFHYLTRPT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01882A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561881e-173BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977036.11e-163AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-157APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A368S0651e-161A0A368S065_SETIT; Uncharacterized protein
STRINGSi012635m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-83AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]