PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01822A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 423aa MW: 47424.8 Da PI: 5.8111

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01822A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.1e-11	133	173	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k+ rr+++NReAAr+sR+RKka+i++Le+ k ++Le+e Oropetium_20150105_01822A 133 EKVLRRLAQNREAARKSRLRKKAYIQQLETsriKLAQLEQE 173 6899************************9722244444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.6E-9	126	177	No hit	No description
SMART	SM00338	6.0E-8	130	194	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.002	132	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-8	133	173	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.04E-22	134	183	No hit	No description
SuperFamily	SSF57959	2.56E-7	136	179	No hit	No description
PROSITE pattern	PS00036	0	137	152	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.0E-31	220	295	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MELYPGYLED HFNIHKLSIG SAASPPEYTT TASAQFAAPV RMGLYERPAP APIGMWSHEP 60 FKVDSGGQGT SACTIMEPDN KFDTEDDYDF LCDLSIPWAH VDELSALLQL EDVPQVALEP 120 TRSTDQETSK PPEKVLRRLA QNREAARKSR LRKKAYIQQL ETSRIKLAQL EQELQRTRQQ 180 GVYANGNLGD SALAFSGSLD AGAAAFEIEY GHWVDEQNRH TAELRNALQG QTSDLELQML 240 VETGLNHYEH LFRIKSMAAH SDVFYIMSGM WKTPAERFFL WIGGFRPSEV LKILRPQLEP 300 LTEPQRMGVC GLQQTSTQAE DALFQGMEKL QQNLTEALTA VVPFVSSEAY TQQMVDAVGK 360 LKELVGFVTQ ADHLRLTTLQ QMHKILTKRQ AARGLLALGD YFQRLRALSQ LWAARPRESA 420 IS*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MELYPGYLED HFNIHKLSIG SAASPPEYTT TASAQFAAPV RMGLYERPAP APIGMWSHEP  60
FKVDSGGQGT SACTIMEPDN KFDTEDDYDF LCDLSIPWAH VDELSALLQL EDVPQVALEP  120
TRSTDQETSK PPEKVLRRLA QNREAARKSR LRKKAYIQQL ETSRIKLAQL EQELQRTRQQ  180
GVYANGNLGD SALAFSGSLD AGAAAFEIEY GHWVDEQNRH TAELRNALQG QTSDLELQML  240
VETGLNHYEH LFRIKSMAAH SDVFYIMSGM WKTPAERFFL WIGGFRPSEV LKILRPQLEP  300
LTEPQRMGVC GLQQTSTQAE DALFQGMEKL QQNLTEALTA VVPFVSSEAY TQQMVDAVGK  360
LKELVGFVTQ ADHLRLTTLQ QMHKILTKRQ AARGLLALGD YFQRLRALSQ LWAARPRESA  420
IS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01822A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823702.1	0.0	transcription factor TGAL6-like isoform X1
Refseq	XP_025823703.1	0.0	transcription factor TGAL6-like isoform X1
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0A9D9I6	0.0	A0A0A9D9I6_ARUDO; Uncharacterized protein
STRING	Pavir.Gb00388.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-126	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01822A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]