PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01714A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 312aa    MW: 34071.9 Da    PI: 9.4464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01714AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.3e-54111381128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhP+d+elv +yL++k++g+      ++ +vd++k+ePwdLp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWk
  Oropetium_20150105_01714A  11 LPPGFRFHPRDDELVLDYLCRKLSGRGGAGGIAMVDVDLNKCEPWDLPVEARVGGSEWYFFSLHDRKYATGHRTNRATRSGYWK 94 
                                79*************************888678***************8888899***************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atgkd+++++++g++vg++ktLvfy+grap+g+kt+Wvmhe+r+
  Oropetium_20150105_01714A  95 ATGKDRPIFCRRGAVVGMRKTLVFYRGRAPRGSKTEWVMHEFRV 138
                                ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-542143IPR003441NAC domain
PROSITE profilePS5100551.89711165IPR003441NAC domain
PfamPF023658.1E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSISMVERR LPPGFRFHPR DDELVLDYLC RKLSGRGGAG GIAMVDVDLN KCEPWDLPVE  60
ARVGGSEWYF FSLHDRKYAT GHRTNRATRS GYWKATGKDR PIFCRRGAVV GMRKTLVFYR  120
GRAPRGSKTE WVMHEFRVEG SAVADALIAA RPGSPPLLKV RVFYRSRTVT TGPTADDVEA  180
TAGSLSNNEL IISVPMMPPM QHTPADVDAY LLAIDHAPAA TIGGYYHHHH HHXXXXXXXX  240
XXXGGGLPAA RVINKSLSSF RELLTSMVGP DGGAVAAKPE LYPDWTEAAA YAQHAAAASS  300
SHAWNPFLSS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-45813812140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01714A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630318e-90EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976831.11e-109NAC domain-containing protein 21/22
TrEMBLK3Y8Y81e-108K3Y8Y8_SETIT; Uncharacterized protein
STRINGSi010680m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.15e-70NAC family protein