PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01682A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27548.3 Da    PI: 8.2134
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01682AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.73.9e-15959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               k+ien +nrqvtfskRr g          LCda++ viifs +gk+yeyss
  Oropetium_20150105_01682A  9 KKIENPTNRQVTFSKRRMGXXXXXXXXXXLCDAQIGVIIFSGSGKMYEYSS 59
                               68***********************************************96 PP
2K-box50.11.2e-17851611490
                      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                                +++  +e++++k+e ++Lq    +++GedL+ Lsl +  +LeqqLe sl k+R +K+ell +q+ e++++e   +e 
  Oropetium_20150105_01682A  85 QQKIIREMTRMKDERNKLQIMMSQYMGEDLNLLSLHHVTSLEQQLELSLYKVRLRKQELLDQQLIEMRHREMHDSEV 161
                                578889****************************************************************9876654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.408161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-21278IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-131057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-203859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-1482158IPR002487Transcription factor, K-box
PROSITE profilePS5129711.9885178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGXXX XXXXXXXLCD AQIGVIIFSG SGKMYEYSSP  60
PWRIANIFDR YLKAPSTRFD EMDIQQKIIR EMTRMKDERN KLQIMMSQYM GEDLNLLSLH  120
HVTSLEQQLE LSLYKVRLRK QELLDQQLIE MRHREMHDSE VQSNSLCLMT QSGEMVTNPK  180
PFPWWDVGGS QQLFVHDVEQ SVTALQLLPQ LGEYKLQPLQ PNLQEANLQS YVLRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01682A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693322e-99KF469332.1 Brachypodium distachyon MADS-box transcription factor 38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822902.11e-114MADS-box transcription factor 31-like isoform X1
RefseqXP_025822903.11e-114MADS-box transcription factor 31-like isoform X1
RefseqXP_025822904.11e-114MADS-box transcription factor 31-like isoform X1
RefseqXP_025822905.11e-114MADS-box transcription factor 31-like isoform X2
SwissprotQ84NC25e-77MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A0E0KV531e-114A0A0E0KV53_ORYPU; Uncharacterized protein
STRINGPavir.Gb00526.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]