PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01549A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 340aa    MW: 36828.5 Da    PI: 6.176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01549AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161564148
                               TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
  Oropetium_20150105_01549A 15 KGPWTEEEDRTLVEHIQKHGGHvsSWRNLPKAAGLNRCGKSCRLRWTNYL 64
                               79**********************************************97 PP
2Myb_DNA-binding54.52.7e-1770114147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg++T++E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
  Oropetium_20150105_01549A  70 RGNFTEDEERLIIALHAELGNK-WSTIATRLD-GRTDNEIKNYWNTH 114
                                89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2451064IPR017930Myb domain
SuperFamilySSF466892.19E-2812111IPR009057Homeodomain-like
SMARTSM007171.8E-111466IPR001005SANT/Myb domain
PfamPF002498.2E-151564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221671IPR009057Homeodomain-like
CDDcd001679.16E-101764No hitNo description
PROSITE profilePS5129427.34765119IPR017930Myb domain
SMARTSM007178.8E-1669117IPR001005SANT/Myb domain
PfamPF002493.0E-1570114IPR001005SANT/Myb domain
CDDcd001673.91E-1272115No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2672119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSPCCCHA AGVKKGPWTE EEDRTLVEHI QKHGGHVSSW RNLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTEDEERL IIALHAELGN KWSTIATRLD GRTDNEIKNY WNTHIRKKLT  120
RMGVDPVTHQ RLPPDDILNC VPGGGGGLVL PETLLCAAAS LRDLDTALRQ AQALQLLLQV  180
IGGSNSNGNS AAAALMMGNY GGLAAGNAML NMNGGGVAAP HLQDQMNNRL AGYYPSGGDA  240
ANFAEQDMAA QQSLKLKSSA PSPASSPNVE PKPTTAVDLY CNPATLERPT YPREVTAGAD  300
LPMQSFTDLL EPGVEMPNLY SLEDDDHFWD DMLDSSFHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28151197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01549A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794321e-159HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.11e-118transcription factor MYB2
SwissprotQ9S9Z22e-65MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D3FZK91e-121A0A0D3FZK9_9ORYZ; Uncharacterized protein
STRINGOBART04G23600.11e-121(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-68myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]