PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01531A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 19321.8 Da PI: 6.3364 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.4e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H+++H Oropetium_20150105_01531A 71 YTCAFCSREFKSAQALGGHMNVH 93 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.54E-6 | 68 | 97 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.8E-6 | 71 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAPTSSSNEE PAAPALVKHI TLHHFLKQKH LLQQHLIKPA VMWSWAAAAT GQDDAAADDD 60 VLGGAWPPRS YTCAFCSREF KSAQALGGHM NVHRRDRAKM RGHNHGAAGL QNPAPAAGGE 120 APHSAEYAVL YPILNSNAAG AVLIPSGDVL LSTPLALAPQ CRASEDDEEE VDLELRLWWP 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 7e-13 | 66 | 93 | 2 | 29 | superman protein |
2l1o_A | 7e-13 | 66 | 93 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01531A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825408.1 | 2e-62 | zinc finger protein 11-like | ||||
TrEMBL | K3YEX9 | 2e-74 | K3YEX9_SETIT; Uncharacterized protein | ||||
STRING | Si012796m | 3e-75 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 2e-19 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01531A |