PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01398A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 596aa    MW: 62299 Da    PI: 8.2068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01398AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0586108123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C+k F r  nL+ H r H
  Oropetium_20150105_01398A  86 FVCEVCNKGFQREQNLQLHRRGH 108
                                89*******************88 PP
2zf-C2H211.60.00088163185123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k++  +s+ k H + +
  Oropetium_20150105_01398A 163 WKCDKCSKRYAVQSDWKAHSKIC 185
                                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.82E-785108No hitNo description
PfamPF121713.9E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09486108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.82E-7158183No hitNo description
SMARTSM00355140163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MASNSSAAFF GIRDGDQQHD QIKPLISPQQ QQQLLASSAL PAGGVADGHG APSAAPPPPK  60
KKRTLPDPDA EVIALSPKTL LATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPL  120
QAQRRRVYLC PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPPTSLSGLT GQLYGANNAG  240
NMALSLSQVG SHLSSTFQDG HHHPSPELLR LGGTAGGSSI AARLDHLLSP TGGASAFRPP  300
QAPPPSAFFL NAAGHDFGDD TGNNGPHSFL QSNKPFHGLM QLPDLQGNGA GGPGGASGQS  360
LFNLGFYSNN GNGGAASSHE HASQQGLMNN DQFSGGAGGG GGGGLEATAA GIFGGNYVGG  420
GGDHVPQAEL YNDQAAGSMS LPQMSATALL QKAAQMGATS AGNGGAASMF RGFVGSSSPH  480
VRPHMEQSDA NLNDLMNSLA GGGGEGMFGG GSNGGGGGAG MFDPRHLCDM EQEVNKFGQG  540
GGGXXXXXXX XXXXXXXXXX XXXXXXXXHQ SSSDMSSLEA EMNKSASSFN GGRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34159225369Zinc finger protein JACKDAW
5b3h_F2e-34159225369Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01398A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A1Z5REM20.0A0A1Z5REM2_SORBI; Uncharacterized protein
STRINGGRMZM2G129261_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-104indeterminate(ID)-domain 12