PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01257A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 316aa    MW: 33894.4 Da    PI: 6.4294
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01257AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.37.7e-091271661352
                                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                                NR +A rs +RK  +i eLe+kv++L++e ++L  +l   
  Oropetium_20150105_01257A 127 NRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 166
                                *********************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579592.39E-9124170No hitNo description
CDDcd147039.11E-20124169No hitNo description
SMARTSM003385.7E-6125179IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-9126173No hitNo description
PfamPF001706.4E-7126167IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.025127180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQQPEAADPP GRAAFPPLPT AARPGSHHRR ARSEVAFRLL DDLDLGGGGG PGGDGLDEIG  60
SEDDLFSTFM DIEKISAAGP TAGSDRDRAA ESSSPPRPKH RHSSSVDGSG LFFSPGSGGG  120
SAAILANRQS AARSKERKAR YITELERKVQ TLQTEATTLS AQLTLFQRDT TGLSTENAEL  180
KIRLQAMEQQ AQLRDALNDA LKQELERLKL ATGEVTNSNE TYNMRFQHVP YNSSFFPLSQ  240
QNTAHRQGGA QLAPAFPPPH PNVPNHQMLS HPNTLQDIMQ QDSIGRFQGL DIGKGPLVVK  300
SESSSISASE SSSNF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01257A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795608.11e-155transcription factor RF2b
SwissprotQ6S4P41e-143RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A0A9NWC61e-155A0A0A9NWC6_ARUDO; Uncharacterized protein
STRINGOPUNC03G15960.11e-149(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.12e-57bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]