PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01179A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 222aa MW: 24304.3 Da PI: 9.9686 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.1 | 4.4e-14 | 164 | 206 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r +r++kNRe+A rsR+RK+a++ eLe+k+++L++eN++L+ Oropetium_20150105_01179A 164 RRKKRMIKNRESAARSRARKQAYTNELENKIAQLQEENDRLRR 206 799**************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.5E-7 | 160 | 218 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.542 | 162 | 206 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-11 | 164 | 207 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.4E-13 | 164 | 207 | No hit | No description |
Pfam | PF00170 | 4.1E-11 | 164 | 206 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.73E-23 | 164 | 206 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 167 | 182 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGAKAMSSHG SGAGGAGGAA ALSRQGSVCS LTFSEVDGHL HGVNLDDLLR AAGAGNKKST 60 VDEVWRGVQQ QGGGYPPRPQ MTLEDFLCRA TDDHGWAQQQ QQQQQQFQQP RLVGHPARPV 120 PRPMGAGAGP AVVDALCHEA GLMKRGAAAA AADGCEVVER SNERRKKRMI KNRESAARSR 180 ARKQAYTNEL ENKIAQLQEE NDRLRRHKVR RLVLYYYYYY Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01179A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361423 | 7e-34 | AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465343.2 | 5e-70 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A1B6QNJ1 | 1e-68 | A0A1B6QNJ1_SORBI; Uncharacterized protein | ||||
STRING | Sb01g036810.1 | 2e-66 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4441 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 7e-18 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01179A |