PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01150A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 335aa MW: 37360.1 Da PI: 8.9442 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.4 | 2e-10 | 49 | 91 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ Oropetium_20150105_01150A 49 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 91 5899*************************86666666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-8 | 46 | 109 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.2E-8 | 46 | 93 | No hit | No description |
PROSITE profile | PS50217 | 9.289 | 48 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-7 | 50 | 91 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-7 | 50 | 93 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.6E-33 | 132 | 207 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MADASSRTDT LTVLDTDDKD QRLENGQSGA AMASYSSDRS DRSDKPMDQK VLRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL 120 EYARWQEEQN KQINELRAAV NAHASDSDLR LIVDGIMAHY DEIFRQKGIA AKADVFHILS 180 GMWKTPAERC FLWLGGFRSS ELLKLLMNHL EPLTEQQTSG LSNLQQSSQQ AEDALSQGME 240 SLQQSLAETL AGSLGTPGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR 300 ILTIRQAARA HLAIHDYFSR LRALSSLWLA RPRE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00492 | DAP | Transfer from AT5G06950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01150A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055446 | 0.0 | BT055446.1 Zea mays full-length cDNA clone ZM_BFb0202I10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558037.1 | 0.0 | transcription factor TGA2.2 isoform X1 | ||||
Swissprot | Q6IVC3 | 0.0 | TGA22_ORYSJ; Transcription factor TGA2.2 | ||||
TrEMBL | I1H628 | 0.0 | I1H628_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G64060.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-129 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01150A |
Publications ? help Back to Top | |||
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