PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01141A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36110.2 Da PI: 4.592 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.7 | 1.6e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++v+ +G g+W++ ar g++Rt+k+c++rw++yl Oropetium_20150105_01141A 23 RGPWTVEEDLLLVNYVATHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Oropetium_20150105_01141A 76 RGNITPQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.659 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-31 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-18 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-12 | 25 | 70 | No hit | No description |
SMART | SM00717 | 6.2E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.873 | 75 | 125 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-11 | 80 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDMAHERDAA SSEEEVMAGE LRRGPWTVEE DLLLVNYVAT HGEGRWNSLA RSAGLKRTGK 60 SCRLRWLNYL RPDLRRGNIT PQEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKHAKQLKC DVNSQRFKDV MRYLWMPRLV ERIQAAASAS GEQQLHAAAD ADTPLSSSWQ 180 NGADDGLYAS PELPADACWP AEYCPATGGL LATAAAVPEL SSTTAGSSSS PSMDSGAGAQ 240 PWPAPPGCGG ADWFTTACDA SSAAVVSMDL MSTQQPQEQP CPLGVGETTW ASEELPELGV 300 ADFEIGSFDV ESIWSMDDSL WYTQAAVQGV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-25 | 14 | 123 | 18 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01141A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679434 | 0.0 | HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791351.1 | 1e-178 | transcription factor MYB2-like | ||||
Swissprot | Q10MB4 | 1e-149 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A1E5W9A3 | 1e-177 | A0A1E5W9A3_9POAL; Transcription factor MYB108 | ||||
STRING | Si035722m | 1e-170 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-84 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01141A |
Publications ? help Back to Top | |||
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