PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01132A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 396aa    MW: 42827.9 Da    PI: 9.7066
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01132AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.2e-10119175155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  + ++   krk  + g ++ +++Aa+a++ a++k++g
  Oropetium_20150105_01132A 119 SSYRGVTRHRWTGRYEAHLWDnTC-RKegqKRKGRQ-GGYDREDKAARAYDLAALKYWG 175
                                67*******************443.44556667777.6699989*************98 PP
2AP248.32.4e-15218270156
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                s y+GV++++++grW A+I  +     +k  +lg+f t+ eAa+a++ a++k++g+
  Oropetium_20150105_01132A 218 SIYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFATEAEAAEAYDIAALKFRGA 270
                                57****************988532...5**********99*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.77E-17119183No hitNo description
PfamPF008471.1E-7119175IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-13119184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-11120184IPR001471AP2/ERF domain
SMARTSM003802.1E-16120189IPR001471AP2/ERF domain
PROSITE profilePS5103217.069120183IPR001471AP2/ERF domain
PRINTSPR003672.3E-6121132IPR001471AP2/ERF domain
PfamPF008479.7E-10218269IPR001471AP2/ERF domain
CDDcd000182.51E-11218279No hitNo description
SuperFamilySSF541714.18E-17218278IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-18219277IPR001471AP2/ERF domain
SMARTSM003801.1E-28219283IPR001471AP2/ERF domain
PROSITE profilePS5103218.439219277IPR001471AP2/ERF domain
PRINTSPR003672.3E-6259279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSPTTNSVVS LAYPRAGTGG LLPPEALLLP FDGITAQDFL VADPSRLSAD QQPLLFLPSS  60
SVSGTSGCFH AKGLATAKPG SPEVVAAAAS VTVAGDAGSS VAPPSPALPL VHATGQRTSS  120
YRGVTRHRWT GRYEAHLWDN TCRKEGQKRK GRQGGYDRED KAARAYDLAA LKYWGANAST  180
NYPRENYVNE IEEMQYMSRH QVVASLRRKS SGFARGASIY RGVTRHHQNG RWQARIGRVA  240
GNKDLYLGTF ATEAEAAEAY DIAALKFRGA MAVTNFEPSR YNLEAIALSD LPVKGPGRRV  300
NLQKPASETE GQVTLNSPSS FSQQSSNNNL AHHLVPNLPQ PQPTHPLQAL PPSDYNYVYQ  360
SNFYWPYGTV QQKVLLDSRL EIVNGLLQLA SSTAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01132A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318170.11e-141AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6PQQ32e-99AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D9VTA91e-145A0A0D9VTA9_9ORYZ; Uncharacterized protein
STRINGLPERR03G13190.11e-146(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.27e-86AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]