PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01132A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | AP2 | ||||||||
Protein Properties | Length: 396aa MW: 42827.9 Da PI: 9.7066 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.5 | 2.2e-10 | 119 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ krk + g ++ +++Aa+a++ a++k++g Oropetium_20150105_01132A 119 SSYRGVTRHRWTGRYEAHLWDnTC-RKegqKRKGRQ-GGYDREDKAARAYDLAALKYWG 175 67*******************443.44556667777.6699989*************98 PP | |||||||
2 | AP2 | 48.3 | 2.4e-15 | 218 | 270 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++grW A+I + +k +lg+f t+ eAa+a++ a++k++g+ Oropetium_20150105_01132A 218 SIYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFATEAEAAEAYDIAALKFRGA 270 57****************988532...5**********99*************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.77E-17 | 119 | 183 | No hit | No description |
Pfam | PF00847 | 1.1E-7 | 119 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-13 | 119 | 184 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-11 | 120 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-16 | 120 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.069 | 120 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 121 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-10 | 218 | 269 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-11 | 218 | 279 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-17 | 218 | 278 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-18 | 219 | 277 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 219 | 283 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.439 | 219 | 277 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 259 | 279 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MSPTTNSVVS LAYPRAGTGG LLPPEALLLP FDGITAQDFL VADPSRLSAD QQPLLFLPSS 60 SVSGTSGCFH AKGLATAKPG SPEVVAAAAS VTVAGDAGSS VAPPSPALPL VHATGQRTSS 120 YRGVTRHRWT GRYEAHLWDN TCRKEGQKRK GRQGGYDRED KAARAYDLAA LKYWGANAST 180 NYPRENYVNE IEEMQYMSRH QVVASLRRKS SGFARGASIY RGVTRHHQNG RWQARIGRVA 240 GNKDLYLGTF ATEAEAAEAY DIAALKFRGA MAVTNFEPSR YNLEAIALSD LPVKGPGRRV 300 NLQKPASETE GQVTLNSPSS FSQQSSNNNL AHHLVPNLPQ PQPTHPLQAL PPSDYNYVYQ 360 SNFYWPYGTV QQKVLLDSRL EIVNGLLQLA SSTAS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01132A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318170.1 | 1e-141 | AP2-like ethylene-responsive transcription factor AIL7 isoform X1 | ||||
Swissprot | Q6PQQ3 | 2e-99 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0D9VTA9 | 1e-145 | A0A0D9VTA9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G13190.1 | 1e-146 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 7e-86 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01132A |
Publications ? help Back to Top | |||
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