PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01029A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 25560.3 Da PI: 10.1313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +G+g+W+t++++ g++R++k+c++r+ +yl Oropetium_20150105_01029A 14 KGPWTPEEDAKLLAFTSTHGTGNWTTVPQRAGLKRCGKSCRLRYTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++ Oropetium_20150105_01029A 69 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 110 89******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.868 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.003 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 66 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-15 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRPPCCDKA NVKKGPWTPE EDAKLLAFTS THGTGNWTTV PQRAGLKRCG KSCRLRYTNY 60 LRPNLKHENF TQEEEELIVT LHAMLGSRWS LIANQLPGRT DNDVKNYWNT KLSKKLRQRG 120 IDPITHRPIA DLMHSIGALA IRPPPQHPNT SAYLPAAPPP LVRDVAAYHA AAAVQQQQQV 180 LIDAGDAPAS PDQLQQLKLA RVAKQLTHHQ IINAVKSIPG PHQSILLESN G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01029A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085491 | 0.0 | BT085491.1 Zea mays full-length cDNA clone ZM_BFc0020H06 mRNA, complete cds. | |||
GenBank | EU967089 | 0.0 | EU967089.1 Zea mays clone 299414 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465411.1 | 1e-113 | myb-related protein Zm38 | ||||
Swissprot | Q9XHV0 | 6e-66 | MYB80_ARATH; Transcription factor MYB80 | ||||
TrEMBL | A0A1Z5S9Y7 | 1e-111 | A0A1Z5S9Y7_SORBI; Uncharacterized protein | ||||
STRING | Sb01g038250.1 | 1e-112 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11874 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 7e-68 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01029A |