PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00912A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 189aa    MW: 20488.4 Da    PI: 7.6724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00912AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00165375123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C++ F++   L  H  +H
  Oropetium_20150105_00912A 53 FECKTCNRQFPSFQALGGHRASH 75
                               89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-851116No hitNo description
PfamPF139123.2E-135277IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8275380IPR007087Zinc finger, C2H2
SMARTSM003550.165375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
PfamPF139121.6E-993118IPR007087Zinc finger, C2H2
PROSITE profilePS501578.694116IPR007087Zinc finger, C2H2
SMARTSM003552.594116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAYGKRSRQQ AEEMVWLPDG VDMAHVMLFL SSHHHHVAAD TAASTPTTPE KVFECKTCNR  60
QFPSFQALGG HRASHKKPRL ADGEPAEPPK PKVHGCSICG LQFSIGQALG GHMRRHRAIV  120
EADGAGIGMG LSLGFGTKDD DIKKTTTARA ELVLDLDLNQ LPAMEEEPDR VRLGLSAAFP  180
IAVDFLRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00912A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796675.14e-77zinc finger protein ZAT11
TrEMBLA0A2S3IRU71e-75A0A2S3IRU7_9POAL; Uncharacterized protein
TrEMBLA0A2T7CE711e-75A0A2T7CE71_9POAL; Uncharacterized protein
STRINGGRMZM2G048154_P014e-76(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.18e-26C2H2 family protein