PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00852A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 735aa MW: 82811.2 Da PI: 6.1111

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00852A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.3	5.2e-120	359	730	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla +f+e+L+arla+++s+ly++l +++t+ s+ l+a++l+ Oropetium_20150105_00852A 359 LRTILIHCAQAVAADDRRTANELLKQIRQHSKPNGDGTQRLAYCFAEGLEARLAGTGSQLYNKLVAKRTT---ASDMLKAYHLY 439 5789**********************************************************999999...9****** PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++P+ ++sh++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa Oropetium_20150105_00852A 440 LAACPFKRLSHFLSNQTILGMIKNATKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLA 523 ****************************************************************9*********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++A++++vpfe++ +a+++e++++e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ Oropetium_20150105_00852A 524 EYAKKFDVPFEYQG-IASKWETIRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSV 606 **********.7**************************************************************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 + F +rf eal ++salfd+le+++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF ++pl+++++ Oropetium_20150105_00852A 607 PFFITRFREALFHFSALFDMLETTVPRDDAQRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFIQAPLNQDIV 690 ******************************************************************************** PP GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ Oropetium_20150105_00852A 691 TKAKEKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 730 *******888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.804	333	710	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-117	359	730	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MGLDNAYGEL SGMFCGGLSY DGYTDHSSSS DYYRFLDSQP AIVPEVAAEP SPNASSTISR 60 ANTETDNPED WEFISDESLN YISRMLMEED IDEKVSLYQA ESAALRAAAK PFYDILGHKF 120 PPSPDHQPTL WSLDSPAESG SSSHAQSYAS TISSSSIGGA VDSNQRYDIG RSVQLETYRD 180 LHGQSFQPLV GPSSDACNAV GEIEDPLITN GRIPEYLFES LPTWDFRRGV EEAQKFLPGS 240 DKLVIDLEAD GVVRPQEARK DVSSSNRKAE VLNSKKNRQS EDLDLLEGRN IKQSAFCSDE 300 PDWIEMFDDL LRQTEKKATV LREMMRNEAS KNSQVTQTKG PSGPRQRGRK PTKRDVVDLR 360 TILIHCAQAV AADDRRTANE LLKQIRQHSK PNGDGTQRLA YCFAEGLEAR LAGTGSQLYN 420 KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILGM IKNATKVHII DFGIYFGFQW 480 PCLIRRLSKR EGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAKKFD VPFEYQGIAS 540 KWETIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV 600 NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRAL IERDLFGREA LNVIACEGSD 660 RVERPETYKQ WQVRNLRAGF IQAPLNQDIV TKAKEKVKDI YHKDFVIDED SGWLLQGWKG 720 RIIYAISTWK PNKN*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MGLDNAYGEL SGMFCGGLSY DGYTDHSSSS DYYRFLDSQP AIVPEVAAEP SPNASSTISR  60
ANTETDNPED WEFISDESLN YISRMLMEED IDEKVSLYQA ESAALRAAAK PFYDILGHKF  120
PPSPDHQPTL WSLDSPAESG SSSHAQSYAS TISSSSIGGA VDSNQRYDIG RSVQLETYRD  180
LHGQSFQPLV GPSSDACNAV GEIEDPLITN GRIPEYLFES LPTWDFRRGV EEAQKFLPGS  240
DKLVIDLEAD GVVRPQEARK DVSSSNRKAE VLNSKKNRQS EDLDLLEGRN IKQSAFCSDE  300
PDWIEMFDDL LRQTEKKATV LREMMRNEAS KNSQVTQTKG PSGPRQRGRK PTKRDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIRQHSK PNGDGTQRLA YCFAEGLEAR LAGTGSQLYN  420
KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILGM IKNATKVHII DFGIYFGFQW  480
PCLIRRLSKR EGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAKKFD VPFEYQGIAS  540
KWETIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRAL IERDLFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF IQAPLNQDIV TKAKEKVKDI YHKDFVIDED SGWLLQGWKG  720
RIIYAISTWK PNKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-50	343	731	1	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00852A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984720.1	0.0	scarecrow-like protein 9
Refseq	XP_004984721.1	0.0	scarecrow-like protein 9
TrEMBL	A0A3L6S7Z0	0.0	A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRING	Pavir.J32327.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00852A