PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00717A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB_related | ||||||||
Protein Properties | Length: 128aa MW: 14153.7 Da PI: 9.7577 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.9 | 3.2e-10 | 3 | 47 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ E +++ +a + +G++ +W+++a+ +g g+t ++++ ++ Oropetium_20150105_00717A 3 EWSKTENQRFERALATYGSDtpgRWERVAAAVGGGKTVEDIRRHY 47 5*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-6 | 1 | 53 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.994 | 1 | 55 | IPR017884 | SANT domain |
CDD | cd00167 | 5.90E-8 | 3 | 47 | No hit | No description |
Pfam | PF00249 | 5.4E-9 | 3 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 3 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.55E-11 | 3 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MAEWSKTENQ RFERALATYG SDTPGRWERV AAAVGGGKTV EDIRRHYALL VEEVGDIESG 60 GYDGYPTNNG SAGNGNTNNR HAHSASTALY IYVSLLQTMI RARFFLVLHA DAMFSRFRRG 120 RTNRPQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-16 | 4 | 80 | 11 | 85 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00717A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313364.1 | 9e-30 | protein RADIALIS-like 3 | ||||
TrEMBL | A0A3L6TNS8 | 7e-30 | A0A3L6TNS8_PANMI; MYB-like transcription factor DIVARICATA | ||||
STRING | Pavir.Ib01055.1.p | 2e-30 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-20 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00717A |