PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00686A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 273aa MW: 28008.6 Da PI: 8.1053

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00686A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.8	5.1e-40	36	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++l Oropetium_20150105_00686A 36 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPGHKRLDAVVTICYEAQARLRDPVYGCVAHIFAL 119 7*********************9989**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+ael +l+++ Oropetium_20150105_00686A 120 QQQVVNLQAELTYLQAH 136 **********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.97	35	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-39	36	134	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSSGGGSCTS TLGGGGGGGG PSGSGGSGGP GGGGGPCGAC KFLRRKCVSG CIFAPYFDSE 60 QGAAHFAAVH KVFGASNVSK LLLQIPGHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ 120 QQVVNLQAEL TYLQAHLATL ELPSPPPLPA PPQMPMPPAP FSISDLPSSS ANVVVPATVD 180 LSALFDMPPQ AQWAAVHQQQ QHHHHQQHQQ LRQQPPPPTT SYGASVRGGP GMAESSSGGG 240 GGDLQALARE LLDRHRSGVK LESPPPPPPH SR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-37	32	130	7	104	LOB family transfactor Ramosa2.1
5ly0_B	4e-37	32	130	7	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00686A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061431	1e-178	BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985011.1	1e-100	LOB domain-containing protein 30-like
Swissprot	O81323	7e-71	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A3L6TU89	1e-101	A0A3L6TU89_PANMI; LOB domain-containing protein 30-like
STRING	Pavir.J34872.1.p	1e-104	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-66	LBD family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00686A

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]