PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00639A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family BBR-BPC
Protein Properties Length: 371aa    MW: 40469.6 Da    PI: 8.5294
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00639AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind234.11.1e-7112981274
                  GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..................rernlalsekkaavaerd....... 57 
                                mdddgs   rn+g+ye     k nlglqlmss++ +rd+k+                  ++++   +++++++++rd       
  Oropetium_20150105_00639A   1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVTaDRDTKPllpndgtflqhhghhngpHHHH--HHHPQHSHHPRDcggasga 79 
                                9*****999******988...************99****************988766543333..367778889999******* PP

                  GAGA_bind  58 .........maflqrdkalae...rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlsepq 118
                                         m+f++++++l     ++++ ++r++k+l+ l+v                +++p+g++++ +++ +++lq+     
  Oropetium_20150105_00639A  80 mpnepssvhMDFVRNEAWLLPsqhQHQHQHPRQQKVLHHLPVGPVGHvghpghgshvvHHHPTGYGMMTDAHGVHTLQM----- 158
                                ******************9764346677888999999988876653323333333344444444444444444444444..... PP

                  GAGA_bind 119 ledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvs 202
                                ++++a+                + +a+ +++++ + +   p+++++ +    +e+s  +  +++  +r + ++k++++ +ng++
  Oropetium_20150105_00639A 159 MQPQAQA---------------QAQAQPQSQPQPQTQDPPPLNEENMQSSLVEEHSL-DGVPSRPTSRGRGPRKTVGMLINGID 226
                                2221111...............11111111222112222222222222222222232.33333334799*************** PP

                  GAGA_bind 203 lDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                                lD s+lP+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaa
  Oropetium_20150105_00639A 227 LDLSRLPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAA 298
                                **********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1211304IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-241192IPR010409GAGA-binding transcriptional activator
PfamPF062174.7E-56207298IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFYETVKG NLGLQLMSSV TADRDTKPLL PNDGTFLQHH GHHNGPHHHH  60
HHHPQHSHHP RDCGGASGAM PNEPSSVHMD FVRNEAWLLP SQHQHQHQHP RQQKVLHHLP  120
VGPVGHVGHP GHGSHVVHHH PTGYGMMTDA HGVHTLQMMQ PQAQAQAQAQ PQSQPQPQTQ  180
DPPPLNEENM QSSLVEEHSL DGVPSRPTSR GRGPRKTVGM LINGIDLDLS RLPTPVCSCT  240
GAPQQCYRWG AGGWQSACCT TSISTYPLPM STKRRGARIA GRKMSQGAFK KVLEKLAAAL  300
CTILSTSTPK SHARQRLGLK GSLAIAVLAI SALEWNGVLA AYWAVEVQLA LLNQPNYHTK  360
LTPTQKDDPD *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00639A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-125protein Barley B recombinant
RefseqXP_021309578.11e-125protein Barley B recombinant
SwissprotQ8GUC31e-110BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A1E5V7481e-125A0A1E5V748_9POAL; Protein Barley B recombinant (Fragment)
STRINGSb02g009750.11e-125(Sorghum bicolor)
STRINGSb02g009782.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.23e-44basic pentacysteine1