PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00637A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 417aa    MW: 44789.9 Da    PI: 9.0034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00637AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.36.9e-0780102123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C++Cg+ F r  nL+ H r+H
  Oropetium_20150105_00637A  80 YVCEICGQGFQREQNLQMHRRRH 102
                                9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.47E-679102No hitNo description
SMARTSM003556.5E-480102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576674.47E-6199222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAALVKSHQQ MLXXXXXXXX XXXXXXAQQR KPPPPSSSCP AAADQQPSPV KRKRRPPGTP  60
DPDAEVVALS PRTLLESDRY VCEICGQGFQ REQNLQMHRR RHKVPWRLVK RTAAGSAATE  120
DGAGGPAGGG GGSAVARKRV FVCPEPSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE HQDACNSGRI RGEVVPAVVP  240
PSTLPGIRPV LPRHPPTDPA AQPPPELQLL PAXXXXXXXX XXXXTTTTTT TTTTKLQLSI  300
GPAAATVGDE EEMRQAMEEK AAADAARQRA REDAAAAECA LEEARRARHR ARAELEKACA  360
LRDHAARLLA QVTCQACRHR SLLTVSVMAG GGDGHGGPAA AVACDPVRGG GVGAGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00637A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3761500.0AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795974.11e-121protein indeterminate-domain 16-like
TrEMBLA0A3L6SAP51e-120A0A3L6SAP5_PANMI; Protein indeterminate-domain 16
STRINGOMERI03G09120.11e-111(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.16e-62C2H2-like zinc finger protein