PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00593A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 302aa    MW: 31888.9 Da    PI: 8.7097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00593AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18129183256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Oropetium_20150105_00593A 129 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 183
                                788899***********************************************98 PP
2HD-ZIP_I/II125.52.5e-40129218191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e 
  Oropetium_20150105_00593A 129 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQREL 212
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                +eLr +l
  Oropetium_20150105_00593A 213 QELR-AL 218
                                ***9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-18110186IPR009057Homeodomain-like
SuperFamilySSF466897.7E-19120186IPR009057Homeodomain-like
PROSITE profilePS5007117.232125185IPR001356Homeobox domain
SMARTSM003897.8E-16127189IPR001356Homeobox domain
PfamPF000462.2E-15129183IPR001356Homeobox domain
CDDcd000869.92E-16129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
SMARTSM003401.5E-22185228IPR003106Leucine zipper, homeobox-associated
PfamPF021837.2E-11185219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAQEDVHHLS DAGLALGLSL GGGGASEAAA AHHGTTTTGS RPRSRASPPC PLEPSLTLSM  60
PDEATATGSG GGGGAHSVSS LSVGGGGGVK RERVEEAETT TGERASSTAA LRSTTTGAGA  120
EDDDDGSTRK KLRLTKEQSA LLEDRFKEHS TLNPKQKVAL AKQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CEFLKRCCET LTEENRRLQR ELQELRALKF AAAPPVATSX XXXXXXXXXX  240
FYMQLPAATL SICPSCDRLG GPGAAGKADP DRPGNKKAAG TVVRTTAAHH FFNPFTHSAA  300
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133TRKKLRL
2177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00593A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985119.11e-111homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE761e-107HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-107HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A3L6TSB81e-113A0A3L6TSB8_PANMI; Homeobox-leucine zipper protein HOX19 isoform X2
STRINGOPUNC03G09020.11e-112(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-51HD-ZIP family protein