PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00486A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Protein Properties

Length: 59aa MW: 6619.57 Da PI: 10.8154

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00486A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.4	2.5e-13	3	52	43	89
S-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 43 grsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 grsW+v+l+ r +++r ++ GW +F+ +ngL++gD++ F++++ ++ Oropetium_20150105_00486A 3 GRSWTVNLKRsrRVHGDRSAFKYGWHQFCVDNGLEVGDTCFFRVVEVrKK 52 9*****666677777799*********************7755444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.437	1	58	IPR003340	B3 DNA binding domain
CDD	cd10017	3.88E-9	2	45	No hit	No description
SuperFamily	SSF101936	5.1E-12	2	48	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-14	2	48	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-10	3	53	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
MGGRSWTVNL KRSRRVHGDR SAFKYGWHQF CVDNGLEVGD TCFFRVVEVR KKGGAFVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00486A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796563.1	9e-23	B3 domain-containing protein Os03g0212300-like
Refseq	XP_025796564.1	9e-23	B3 domain-containing protein Os03g0212300-like
Swissprot	Q10Q26	1e-18	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A0A9SID0	1e-22	A0A0A9SID0_ARUDO; Uncharacterized protein
STRING	Pavir.Ia04671.1.p	3e-23	(Panicum virgatum)
STRING	Pavir.J22021.1.p	6e-25	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00486A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]