PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00400A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26254.5 Da    PI: 6.1635
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00400AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1863116356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+++++++q + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Oropetium_20150105_00400A  63 KKRRLSDDQARFLEMSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 116
                                56689***********************************************99 PP
2HD-ZIP_I/II112.72.3e-3663154293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kkrrls++q+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  
  Oropetium_20150105_00400A  63 KKRRLSDDQARFLEMSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRAAHDAVVLQNCHLETELL 146
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L+++l+e
  Oropetium_20150105_00400A 147 KLKDRLTE 154
                                ***99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.68258118IPR001356Homeobox domain
SMARTSM003894.3E-1661122IPR001356Homeobox domain
SuperFamilySSF466892.95E-1662124IPR009057Homeodomain-like
CDDcd000868.25E-1663118No hitNo description
Gene3DG3DSA:1.10.10.608.6E-1763116IPR009057Homeodomain-like
PfamPF000463.6E-1663116IPR001356Homeobox domain
PRINTSPR000315.3E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000315.3E-698114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGCEEEEMLL FPSSFAFLPA SESFAEAVDT SGSGGEQKKV RQRRRRKPKP AAEAGEGGDE  60
QAKKRRLSDD QARFLEMSFR KERKLETPRK VQLAAELGLD AKQVAVWFQN RRARHKSKLM  120
EEEFAKLRAA HDAVVLQNCH LETELLKLKD RLTEVEEEKR KLLAAAAPGG GGAGSCSPSS  180
SSFSTVTCNP AALAVGQFGV EEEAADLSYI NDYAYNNYMM DFAAAGYFGG GVVYDHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14465RRKPKPAAEAGEGGDEQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00400A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431631e-171BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465695.11e-100homeobox-leucine zipper protein HOX12
SwissprotA2XDK56e-86HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLC5WTV63e-99C5WTV6_SORBI; Uncharacterized protein
STRINGPavir.Ib00656.1.p1e-100(Panicum virgatum)
STRINGSb01g043910.11e-100(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-31homeobox protein 40