PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00394A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 535aa    MW: 55963.7 Da    PI: 9.2464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00394AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-055981123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C+k F r  nL+ H r H
  Oropetium_20150105_00394A 59 FVCEICNKGFQRDQNLQLHRRGH 81
                               89*******************88 PP
2zf-C2H213.20.00027135157123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k +  +s+ k H +t+
  Oropetium_20150105_00394A 135 WKCDKCSKKYAVQSDWKAHTKTC 157
                                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.69E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.8E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PfamPF121718.6E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355210100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.69E-7130155No hitNo description
SMARTSM00355140135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MEXXXXXXXX XXXXSGVAQQ QLPPPGQPPK KKRALPGMPD PDAEVIALSP KTLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SGKEVRKRVY VCPEPSCVHH DPSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHTKTCGTR EYRCDCGTLF SRRDSFITHR  180
AFCDALAEES AKARAGAPAE QDGTSAAVVP PPAPPPTQAP PPAAAPAPLR QQPPPPLPAA  240
APVPPHHAEQ RNERESNGAE LAQFTPPPPP PPPPQVPVAV SSQAPAPAAK VSPAAATTTT  300
MFAPPSMAPA PQFANIGGGV RAPESALPAK PPPLCLSTDA SSSIFTAPVV SDRQQFAPPP  360
PPPPAPSPHM SATALLQKAA QMGATSSSSS FLRGLGLDVS TSSPGASSSG QQHHPEPALQ  420
QWPARLVTEP EPVLSAGLGL GLPYDSTGAP VCLPELMMGQ SSLFSAKPAT LDFLGLGMSP  480
TATSASRGLS AFIQPMGDAV GIGGGGPGAA EAFGAGHGVQ AKPWERNTSS SPIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36131192364Zinc finger protein JACKDAW
5b3h_F1e-36131192364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00394A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985335.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-144IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLK4A8770.0K4A877_SETIT; Uncharacterized protein
STRINGSi035083m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]