PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00358A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 533aa    MW: 59292.6 Da    PI: 6.2561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00358AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.49.5e-1301645312373
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++ +++c +av++ ++   ++lL++l++l+s +g+pmqRl ay++e+L arl+ +++ lyk+l+++e +   sse +++++l++
  Oropetium_20150105_00358A 164 KQMIIACGKAVDE-NACYMDSLLSELRQLVSVSGEPMQRLGAYMLEGLVARLSFTGHALYKSLKCKEPT---SSELMSYMHLLY 243
                                78899*****988.88999*************************************************9...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                e++P++kf+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+Rp+  p+lRiTg+++++s   +   l+ +g++L++
  Oropetium_20150105_00358A 244 EICPFFKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWMTMIQALAARPGRRPHLRITGIDDSNSAhaRGGGLNIVGQKLHR 327
                                ****************************************************************8888889999********** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +A++++++fefn+ v  + +++++e+L v+pgEa+aVn+++qlh+++desvs+e++rd++L++vkslsP+vv++veqea++n++
  Oropetium_20150105_00358A 328 VAQSCDLSFEFNA-VPAASHEVTFEHLGVRPGEAIAVNFAYQLHHTPDESVSIENHRDRILRMVKSLSPRVVTLVEQEANTNTA 410
                                *************.7999****************************************************************** PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                +F+ r +e+l+yy+a+f+++++  pr++++ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl +aGF+p+pls  +++
  Oropetium_20150105_00358A 411 PFFLRYMETLDYYTAMFEAIDVARPRDDKQRISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLAMAGFRPYPLSPVVNS 494
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++k+ll  ++   yr+ee++g ++lgWk+r+Lv+ SaW
  Oropetium_20150105_00358A 495 TIKTLLDSYHTY-YRLEEKDGVIYLGWKNRKLVVSSAW 531
                                **********55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.1137513IPR005202Transcription factor GRAS
PfamPF035143.3E-127164531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MTTQASNRSY RYPDNSQVPY YNGNLMHAGA NGAYYMQQNH DDIHYLSSDD GSQTSNSRSQ  60
TQYCTLDSSS ADCVYPANSS ASSQSISGSP LSQQEIHSDH AYGSSPSASC VTQVPDIDAT  120
LRHLENMMFG PDSDISSDNS LLPGTALDQN NWKELLGINT GDLKQMIIAC GKAVDENACY  180
MDSLLSELRQ LVSVSGEPMQ RLGAYMLEGL VARLSFTGHA LYKSLKCKEP TSSELMSYMH  240
LLYEICPFFK FGYMSANGAI AEAVKGENFI HIIDFQIAQG SQWMTMIQAL AARPGRRPHL  300
RITGIDDSNS AHARGGGLNI VGQKLHRVAQ SCDLSFEFNA VPAASHEVTF EHLGVRPGEA  360
IAVNFAYQLH HTPDESVSIE NHRDRILRMV KSLSPRVVTL VEQEANTNTA PFFLRYMETL  420
DYYTAMFEAI DVARPRDDKQ RISTEQHCVA RDIVNLIACE GAERVERHEP FGKWRARLAM  480
AGFRPYPLSP VVNSTIKTLL DSYHTYYRLE EKDGVIYLGW KNRKLVVSSA WC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-591655316374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00358A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985375.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2T7CGG80.0A0A2T7CGG8_9POAL; Uncharacterized protein
STRINGSi035089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]