PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00282A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 315aa MW: 34527.8 Da PI: 7.1943

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00282A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.4e-50	11	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF+Ptd+e++v+yL kk++g+ +++++++++vdiyk++PwdLp k++ ++ ew+fFs+rd+ky++g r+nr++ sgyW Oropetium_20150105_00282A 11 LPPGFRFQPTDQEIIVDYLDKKIAGTATSVTSIVADVDIYKFDPWDLPdKAIVFGDGEWFFFSPRDRKYPNGGRPNRTAGSGYW 94 79**************************999***********777777999*********************** PP NAM 84 katgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 katg+dk++l+++g+ g+kk Lvfy+gr+pkg+kt+Wvmheyrl Oropetium_20150105_00282A 95 KATGTDKPILAAGGAPhcLGVKKALVFYQGRSPKGTKTEWVMHEYRL 141 *******85554559************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-59	4	174	IPR003441	NAC domain
PROSITE profile	PS51005	58.702	11	174	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	12	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAAFRLGIPQ LPPGFRFQPT DQEIIVDYLD KKIAGTATSV TSIVADVDIY KFDPWDLPDK 60 AIVFGDGEWF FFSPRDRKYP NGGRPNRTAG SGYWKATGTD KPILAAGGAP HCLGVKKALV 120 FYQGRSPKGT KTEWVMHEYR LLLDQHHHIV SRRPNSNRDS MRLDDWVLCR VRKKGVCYVD 180 YATSSDQPTM SPVHISRDVQ VPTVNASSAG GFLGDVVVEG WNYSFELASA DIGGGGAAAS 240 TGTGHQYYQG SQTGQLVSSM LESIKRKLSF QAIDELYLLQ PTSKRANTVR TAAAGDDEQM 300 SPTSFSISET DEVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-65	11	174	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-65	11	174	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-65	11	174	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-65	11	174	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-65	11	174	20	168	NAC domain-containing protein 19
3swm_B	4e-65	11	174	20	168	NAC domain-containing protein 19
3swm_C	4e-65	11	174	20	168	NAC domain-containing protein 19
3swm_D	4e-65	11	174	20	168	NAC domain-containing protein 19
3swp_A	4e-65	11	174	20	168	NAC domain-containing protein 19
3swp_B	4e-65	11	174	20	168	NAC domain-containing protein 19
3swp_C	4e-65	11	174	20	168	NAC domain-containing protein 19
3swp_D	4e-65	11	174	20	168	NAC domain-containing protein 19
4dul_A	3e-65	11	174	17	165	NAC domain-containing protein 19
4dul_B	3e-65	11	174	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00282A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454866.1	1e-114	NAC transcription factor 25
Swissprot	A0SPJ9	2e-71	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2Z5E009	1e-114	A0A2Z5E009_SETIT; NAC domain transcriptional regulator
STRING	Sb03g000330.1	1e-114	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	9e-71	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00282A

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]