PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00251A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 422aa    MW: 46179.1 Da    PI: 6.8656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00251AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-092442821455
                        AP2  14 rWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                rW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Oropetium_20150105_00251A 244 RWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 282
                                57777666422...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.501232290IPR001471AP2/ERF domain
CDDcd000182.65E-21237292No hitNo description
SuperFamilySSF541712.09E-14237292IPR016177DNA-binding domain
SMARTSM003804.0E-25238296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-14240290IPR001471AP2/ERF domain
PfamPF008473.4E-4244282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPLHSDDASL PYASPDWRQA KGPKLEDFLS VTCSNKSDGN HADQPKYHEV HDLQPLSGPY  60
YYXXXXXXXX XIDLEINVNA PPHPDQTVLA LQDHHSHHNF LPHHHAGQQY FLGTPANQAS  120
PGGGAMPPLM PMYNAAAGIG SSMSISGIKS WLREAMYVPE RSSALSLSVP DVPCEPLPAA  180
PMPVARRAAQ TFGQRTSQFR GVTSTYEKEL EEMKHMSRQE FIAHLRRNSS GFSRGASMYR  240
GVTRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ISKYDVKRXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA PPGGVDQGGG ASDNSDTSEG  360
HRGAHLLHGL QYAPAMKFET GEGSDGGGGN WMTTVGAARP VAGGVASVHH HQLPVFALWN  420
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00251A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557679e-72BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.11e-124AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6SCK61e-131A0A3L6SCK6_PANMI; Uncharacterized protein
STRINGSi035073m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3168344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-46AINTEGUMENTA-like 5